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[173035_s_at]

Description CEC1123_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=C11112 /DEF=C.elegans cDNA clone yk164b6 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 21      6grp_high1_10_10 > 11      4grp_high_8_8 > 49      6grp_highest_nonorm > 41      6grp_total > 23      4grp_total > 54      6grp_highest_sub > De      6grp_cgc > 30      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 759
1 2 3 4 range
A 758.6
(3)
P 		500.2
(0.7)
P 		355
(-0.6)
P 		86.5
(-3)
A 		672
B 812.2
(3)
P 		404.4
(-0.5)
P 		455.4
(-0.1)
P 		111.4
(-3)
P 		701
C 819.8
(3)
P 		283.7
(-1.2)
P 		491.3
(0.4)
P 		60.8
(-3)
P 		759
avr 796.9
(3) 		396.1
(-0.4) 		433.9
(-0.1) 		86.2
(-3) 		711

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 780
1 2 3 4 5 6 range
A 865.2
(2.5)
P 		907
(3)
P 		706.8
(0.5)
P 		894.9
(2.9)
P 		457.1
(-2.5)
P 		418.8
(-3)
P 		488
B 792.6
(2.6)
P 		809
(2.8)
P 		820.1
(3)
P 		618.9
(0)
P 		450.8
(-2.5)
P 		416.3
(-3)
P 		404
C 1196.6
(3)
P 		725.7
(-0.8)
P 		852
(0.2)
P 		625.6
(-1.6)
P 		660.1
(-1.4)
P 		459.1
(-3)
P 		738
avr 951.5
(3) 		813.9
(1.4) 		793
(1.2) 		713.1
(0.2) 		522.7
(-1.9) 		431.4
(-3) 		520
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 266
1 2 3 4 range
A 276.2
(3)
P 		108.6
(-0.8)
P 		92.8
(-1.2)
P 		12.7
(-3)
A 		264
B 259
(3)
P 		99.9
(-1.1)
P 		105.5
(-0.9)
P 		23.7
(-3)
P 		235
C 271.4
(3)
P 		81.6
(-1.4)
P 		171.2
(0.7)
P 		10.3
(-3)
P 		261
avr 268.9
(3) 		96.7
(-1.1) 		123.2
(-0.5) 		15.6
(-3) 		253

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 342
1 2 3 4 5 6 range
A 159.5
(-1.4)
P 		322.6
(3)
P 		153.9
(-1.6)
P 		227
(0.4)
P 		137.9
(-2)
P 		102
(-3)
P 		221
B 275.8
(3)
P 		269.3
(2.7)
P 		199.1
(-0.8)
P 		163.9
(-2.6)
P 		183.1
(-1.6)
P 		155.2
(-3)
P 		121
C 443.5
(3)
P 		221.4
(-1.2)
P 		216.8
(-1.3)
P 		125.8
(-3)
P 		213.6
(-1.3)
P 		153.7
(-2.5)
P 		318
avr 292.9
(3) 		271.1
(2.2) 		189.9
(-1) 		172.2
(-1.6) 		178.2
(-1.4) 		137
(-3) 		156
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173035_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27090
Sequence Type Exemplar sequence
Representative Public ID CEC1123 NCBI
Target Description CEC1123_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=C11112 /DEF=C.elegans cDNA clone yk164b6 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071892(11), NM_171452(11), NM_171927(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071892 NCBI Caenorhabditis elegans Nematode AStacin protease family member (nas-9) (nas-9) mRNA, complete cds. 11/11 A 
NM_171452 NCBI Caenorhabditis elegans Nematode AStacin protease family member (nas-9) (nas-9) mRNA, complete cds. 11/11 A 
NM_171927 NCBI Caenorhabditis elegans Nematode AStacin protease family member (nas-9) (nas-9) mRNA, complete cds. 11/11 A 
SNAP00000016585 ENSEMBL cdna:SNAP chromosome:CEL140:V:4835851:4839733:-1 11/11 None
GENEFINDER00000016601 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4835851:4840379:-1 11/11 None
C37H5.9c.1 ENSEMBL cdna:known chromosome:CEL140:V:4835851:4839824:-1 gene:C37H5.9 11/11 A 
C37H5.9b ENSEMBL cdna:known chromosome:CEL140:V:4835851:4839733:-1 gene:C37H5.9 11/11 A 
C37H5.9c.2 ENSEMBL cdna:known chromosome:CEL140:V:4835851:4839779:-1 gene:C37H5.9 11/11 A 
C37H5.9a ENSEMBL cdna:known chromosome:CEL140:V:4835851:4839733:-1 gene:C37H5.9 11/11 A 
C37H5.9c.3 ENSEMBL cdna:known chromosome:CEL140:V:4835851:4839797:-1 gene:C37H5.9 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4835918-4836172(-) 84.67 84.67
Public Domain and Genome References
Ensembl C37H5.9
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAN84845 Nematode astacin protease protein 9, isoform c [Caenorhabditis elegans] ref|NP_504293.2| Nematode AStacin protease family member (nas-9) [Caenorhabditis elegans] 0.0
blast AAL16314 Nematode astacin protease protein 9, isoform b [Caenorhabditis elegans] ref|NP_741532.1| Nematode AStacin protease family member (nas-9) [Caenorhabditis elegans] sp|P91137|NAS9_CAEEL Zinc metalloproteinase nas-9 precursor (Nematode astacin 9) 0.0
blast AAB42372 Nematode astacin protease protein 9, isoform a [Caenorhabditis elegans] ref|NP_741531.1| Nematode AStacin protease family member (nas-9) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001506 EMBL-EBI Peptidase M12A, astacin 4.0E-69
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 4.8E-5
Pfam IPR001506 EMBL-EBI Peptidase M12A, astacin 4.0E-69
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 4.8E-5
Pfam IPR001506 EMBL-EBI Peptidase M12A, astacin 7.1E-12
Pfam IPR001506 EMBL-EBI Peptidase M12A, astacin 2.1E-31
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 4.8E-5
Pfam IPR001506 EMBL-EBI Peptidase M12A, astacin 5.6E-12
Pfam IPR001506 EMBL-EBI Peptidase M12A, astacin 3.0E-49
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 4.8E-5
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000016601 1 42-64
Sequence
Target Sequence 
>C. ELEGANS:173035_S_AT
ccaagtacgcctacgactctataatgcactataacgcatatctcggcgccaaggacccca
acaagncgacgatgatnccgttggtgaatccacaggagaacaccccgaaactgggtcaac
gagccaaactgacccgcggcgacatccggttgctcaacaaaaatgtactgccgtccggga
tgtga

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCAAGTACGCCTACGACTCTATAAT 27 277 86 Antisense
GTACGCCTACGACTCTATAATGCAC 194 459 90 Antisense
CGCCTACGACTCTATAATGCACTAT 697 255 93 Antisense
ACGACTCTATAATGCACTATAACGC 169 93 98 Antisense
GCACTATAACGCATATCTCGGCGCC 166 317 111 Antisense
TAACGCATATCTCGGCGCCAAGGAC 378 639 117 Antisense
GTGAATCCACAGGAGAACACCCCGA 337 481 169 Antisense
CCACAGGAGAACACCCCGAAACTGG 3 275 175 Antisense
GAAACTGGGTCAACGAGCCAAACTG 275 355 192 Antisense
GGTCAACGAGCCAAACTGACCCGCG 243 503 199 Antisense
AAATGTACTGCCGTCCGGGATGTGA 459 119 246 Antisense
Sequence Source Affymetrix Proprietary Database