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[173033_at]

Description C53294_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=C53294 /DEF=C.elegans cDNA clone yk296e3 : 3prime end, single read.
Cluster 6grp_total > 77      4grp_total > 10      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 427
1 2 3 4 range
A 83
(-2.4)
A 		93.1
(-2.3)
A 		44.9
(-3)
A 		439.5
(3)
P 		395
B 48.9
(-2.4)
A 		79.1
(-1.8)
A 		12.7
(-3)
A 		349.5
(3)
P 		337
C 73.5
(-2.4)
A 		85
(-2.2)
A 		42.9
(-3)
A 		354.3
(3)
P 		311
avr 68.5
(-2.4) 		85.7
(-2.1) 		33.5
(-3) 		381.1
(3) 		348

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3199
1 2 3 4 5 6 range
A 93.8
(-2.9)
P 		85.9
(-2.9)
A 		69.1
(-2.9)
A 		36.7
(-3)
A 		456.7
(-2.2)
P 		3229.1
(3)
P 		3192
B 62.6
(-2.9)
P 		64.4
(-2.9)
A 		41.2
(-3)
A 		30.3
(-3)
A 		374
(-2.3)
P 		2837.9
(3)
P 		2808
C 80.7
(-2.9)
A 		55.4
(-3)
A 		76.5
(-2.9)
A 		75.4
(-2.9)
A 		625.5
(-1.6)
P 		2433.2
(3)
P 		2378
avr 79
(-2.9) 		68.6
(-3) 		62.3
(-3) 		47.5
(-3) 		485.4
(-2.1) 		2833.4
(3) 		2786
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 72
1 2 3 4 range
A 30.2
(-0.9)
A 		20.2
(-2)
A 		11.7
(-3)
A 		64.3
(3)
P 		53
B 15.6
(-1.9)
A 		19.5
(-1.6)
A 		2.9
(-3)
A 		74.5
(3)
P 		72
C 24.3
(-1.8)
A 		24.4
(-1.7)
A 		15
(-3)
A 		59.7
(3)
P 		45
avr 23.4
(-1.6) 		21.4
(-1.8) 		9.9
(-3) 		66.2
(3) 		56

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1050
1 2 3 4 5 6 range
A 17.3
(-2.9)
P 		30.6
(-2.8)
A 		15
(-3)
A 		9.3
(-3)
A 		137.8
(-2)
P 		786.2
(3)
P 		777
B 21.8
(-2.9)
P 		21.4
(-2.9)
A 		10
(-3)
A 		8
(-3)
A 		151.9
(-2.2)
P 		1058.2
(3)
P 		1050
C 29.9
(-2.9)
A 		16.9
(-3)
A 		19.5
(-3)
A 		15.2
(-3)
A 		202.4
(-1.6)
P 		814.5
(3)
P 		799
avr 23
(-2.9) 		23
(-2.9) 		14.8
(-3) 		10.8
(-3) 		164
(-2) 		886.3
(3) 		876
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173033_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26490
Sequence Type Exemplar sequence
Representative Public ID C53294 NCBI
Target Description C53294_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=C53294 /DEF=C.elegans cDNA clone yk296e3 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028583(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028583 NCBI Caenorhabditis elegans D1086.9 (D1086.9) mRNA, complete cds. 11/11 None
D1086.9 ENSEMBL cdna:known chromosome:CEL140:V:14106858:14109004:1 gene:D1086.9 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000005253 7/11 Cross Hyb Matching Probes None
GENEFINDER00000005260 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14108734-14109004(+) 89.33 89.33
Public Domain and Genome References
Gene Title
Ensembl D1086.9
Entrez Gene 179910 Entrez gene
SwissProt Q7YSS2 EMBL-EBI
WormBase CE34782 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE17868 Hypothetical protein D1086.9 [Caenorhabditis elegans] emb|CAE17747.1| Hypothetical protein D1086.9 [Caenorhabditis elegans] ref|NP_001023754.1| D1086.9 [Caenorhabditis elegans] 0.0
blast CAE64238 Hypothetical protein CBG08875 [Caenorhabditis briggsae] 1.0E-112
blast CAE61019 Hypothetical protein CBG04759 [Caenorhabditis briggsae] 1.0E-104
Sequence
Target Sequence 
>C. ELEGANS:173033_AT
acaagctgatcaagaacaacaccgtggatcccgatctgccggccagaaggggactggaca
agctgatgttgaaccaaagcctgtgaagcgagctgccggggaaaaaggatctcaacatgc
tgagatcgacccaatgttccacccacagatgtaagatattgcatatggacaagctccgct
cgagtgaattccacttcgacgaaaact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACAAGCTGATCAAGAACAACACCGT 223 113 73 Antisense
AAGAACAACACCGTGGATCCCGATC 613 151 84 Antisense
CGATCTGCCGGCCAGAAGGGGACTG 85 249 104 Antisense
AAGCTGATGTTGAACCAAAGCCTGT 114 149 132 Antisense
CAAAGCCTGTGAAGCGAGCTGCCGG 95 193 147 Antisense
GCGAGCTGCCGGGGAAAAAGGATCT 521 271 160 Antisense
CATGCTGAGATCGACCCAATGTTCC 50 211 188 Antisense
CCAATGTTCCACCCACAGATGTAAG 276 277 203 Antisense
ATTGCATATGGACAAGCTCCGCTCG 195 7 230 Antisense
GACAAGCTCCGCTCGAGTGAATTCC 512 365 240 Antisense
AGTGAATTCCACTTCGACGAAAACT 443 59 255 Antisense
Sequence Source Affymetrix Proprietary Database