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[173031_s_at]

Description C29875_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=C29875 /DEF=C.elegans cDNA clone yk221g3 : 3prime end, single read.
Cluster 6grp_total > 99      4grp_total > 05      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 259
1 2 3 4 range
A 507.6
(-0.4)
P 		400.9
(-3)
A 		420.4
(-2.5)
A 		643.4
(3)
P 		243
B 491.8
(-0.4)
A 		400.5
(-2.6)
A 		384.3
(-3)
A 		633
(3)
P 		249
C 517.7
(0.1)
P 		403.3
(-3)
A 		416
(-2.7)
A 		621.5
(3)
P 		218
avr 505.7
(-0.3) 		401.6
(-3) 		406.9
(-2.9) 		632.6
(3) 		231

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 274
1 2 3 4 5 6 range
A 371.5
(-1.7)
A 		427
(-0.4)
P 		316.7
(-3)
P 		424.6
(-0.5)
A 		545.8
(2.4)
P 		571.7
(3)
P 		255
B 396.3
(-2)
A 		420.9
(-1.2)
P 		361.6
(-3)
M 		413.5
(-1.4)
A 		481.2
(0.6)
P 		561.4
(3)
P 		200
C 475.7
(0.5)
P 		315.8
(-3)
P 		492.6
(0.9)
A 		393.9
(-1.3)
A 		589.4
(3)
P 		508.8
(1.2)
P 		274
avr 414.5
(-2) 		387.9
(-3) 		390.3
(-2.9) 		410.7
(-2.1) 		538.8
(2.7) 		547.3
(3) 		159
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 98
1 2 3 4 range
A 184.8
(3)
P 		87
(-3)
A 		109.9
(-1.6)
A 		94.2
(-2.6)
P 		98
B 156.8
(3)
A 		98.9
(-2.1)
A 		89.1
(-3)
A 		134.9
(1.1)
P 		68
C 171.4
(3)
P 		116
(-2)
A 		145
(0.6)
A 		104.8
(-3)
P 		67
avr 171
(3) 		100.6
(-3) 		114.7
(-1.8) 		111.3
(-2.1) 		70

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 141
1 2 3 4 5 6 range
A 68.5
(-3)
A 		151.9
(2.2)
P 		69
(-3)
P 		107.7
(-0.6)
A 		164.7
(3)
P 		139.2
(1.4)
P 		96
B 137.9
(-0.5)
A 		140.1
(-0.4)
P 		87.8
(-3)
M 		109.5
(-1.9)
A 		195.5
(2.3)
P 		209.3
(3)
P 		122
C 176.3
(2.2)
P 		96.4
(-2.1)
P 		125.4
(-0.5)
A 		79.2
(-3)
A 		190.7
(3)
P 		170.3
(1.9)
P 		112
avr 127.6
(-0.8) 		129.5
(-0.6) 		94.1
(-3) 		98.8
(-2.7) 		183.6
(3) 		172.9
(2.3) 		90
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173031_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26272
Sequence Type Exemplar sequence
Representative Public ID C29875 NCBI
Target Description C29875_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=C29875 /DEF=C.elegans cDNA clone yk221g3 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071762(11), NM_071764(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071762 NCBI Caenorhabditis elegans Y45G5AM.9a (Y45G5AM.9) mRNA, complete cds. 11/11 A 
NM_071764 NCBI Caenorhabditis elegans Y45G5AM.9b (Y45G5AM.9) mRNA, complete cds. 11/11 A 
SNAP00000024448 ENSEMBL cdna:SNAP chromosome:CEL140:V:4181398:4185503:-1 11/11 None
GENEFINDER00000024451 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4182448:4185503:-1 11/11 None
Y45G5AM.9a ENSEMBL cdna:known chromosome:CEL140:V:4181154:4191322:-1 gene:Y45G5AM.9 11/11 A 
Y45G5AM.9b ENSEMBL cdna:known chromosome:CEL140:V:4183154:4191329:-1 gene:Y45G5AM.9 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4183231-4184352(-) 100.0 100.0
Public Domain and Genome References
Ensembl Y45G5AM.9
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_504163 Y45G5AM.9a [Caenorhabditis elegans] gb|AAG23358.2| Hypothetical protein Y45G5AM.9a [Caenorhabditis elegans] 0.0
blast NP_504165 Y45G5AM.9b [Caenorhabditis elegans] gb|AAO25978.1| Hypothetical protein Y45G5AM.9b [Caenorhabditis elegans] 1.0E-173
blast NP_504163 Y45G5AM.9a [Caenorhabditis elegans] gb|AAG23358.2| Hypothetical protein Y45G5AM.9a [Caenorhabditis elegans] 1.0E-162
blast NP_504165 Y45G5AM.9b [Caenorhabditis elegans] gb|AAO25978.1| Hypothetical protein Y45G5AM.9b [Caenorhabditis elegans] 1.0E-154
blast NP_504163 Y45G5AM.9a [Caenorhabditis elegans] gb|AAG23358.2| Hypothetical protein Y45G5AM.9a [Caenorhabditis elegans] 1.0E-154
blast NP_504165 Y45G5AM.9b [Caenorhabditis elegans] gb|AAO25978.1| Hypothetical protein Y45G5AM.9b [Caenorhabditis elegans] 1.0E-100
Sequence
Target Sequence 
>C. ELEGANS:173031_S_AT
aaaaagagccccgagccatgaactcgttcttcgatacttcaaatctactacttccaacac
caattcaagccaccantacgtcatcatcaacagaatcatcgcatgattcctcggccacgg
ccaccaatccaaagacatcatcctcatcaccaccgtcgtctgtcatcgattcgccgtcgg
ttcccgcagtggactttgactgggatacgtctggactcacg

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAAAGAGCCCCGAGCCATGAACTC 708 127 62 Antisense
CCCCGAGCCATGAACTCGTTCTTCG 407 257 70 Antisense
TGAACTCGTTCTTCGATACTTCAAA 146 573 80 Antisense
ACTTCAAATCTACTACTTCCAACAC 231 103 97 Antisense
AAATCTACTACTTCCAACACCAATT 468 117 102 Antisense
TACTTCCAACACCAATTCAAGCCAC 485 645 110 Antisense
GAATCATCGCATGATTCCTCGGCCA 680 327 154 Antisense
ACGGCCACCAATCCAAAGACATCAT 110 97 178 Antisense
AATCCAAAGACATCATCCTCATCAC 431 167 187 Antisense
GTTCCCGCAGTGGACTTTGACTGGG 587 441 241 Antisense
TGACTGGGATACGTCTGGACTCACG 324 571 258 Antisense
Sequence Source Affymetrix Proprietary Database