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[173030_at]

Description C31818_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=C31818 /DEF=C.elegans cDNA clone yk345d5 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 80      6grp_total > 82      4grp_total > 49      6grp_high1_sub > 02_03_04_05      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 194
1 2 3 4 range
A 3.9
(-3)
A 		123.6
(0.7)
P 		197
(3)
P 		6.6
(-2.9)
A 		193
B 6.7
(-2.8)
A 		148.3
(3)
P 		127.9
(2.2)
M 		3
(-3)
A 		145
C 13.8
(-3)
A 		176
(3)
P 		149.8
(2)
P 		39.8
(-2)
A 		162
avr 8.1
(-3) 		149.3
(2.6) 		158.2
(3) 		16.5
(-2.7) 		150

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 127
1 2 3 4 5 6 range
A 48.3
(-3)
A 		92.4
(-0.9)
P 		96.8
(-0.7)
P 		62.5
(-2.3)
P 		172.3
(3)
P 		77.9
(-1.6)
P 		124
B 73.3
(-2.2)
P 		175.2
(3)
P 		137.5
(1.1)
P 		129.1
(0.6)
P 		126.4
(0.5)
P 		58.4
(-3)
P 		117
C 50.9
(-3)
A 		105.3
(-0.2)
P 		103.7
(-0.3)
P 		167.8
(3)
P 		110.5
(0.1)
P 		86.4
(-1.2)
P 		117
avr 57.5
(-3) 		124.3
(2.1) 		112.7
(1.2) 		119.8
(1.7) 		136.4
(3) 		74.2
(-1.7) 		79
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 1.4
(-3)
A 		26.8
(0.1)
P 		51.5
(3)
P 		1
(-3)
A 		51
B 2.1
(-2.8)
A 		36.6
(3)
P 		29.6
(1.8)
M 		0.6
(-3)
A 		36
C 4.6
(-3)
A 		50.6
(2.8)
P 		52.2
(3)
P 		6.7
(-2.7)
A 		48
avr 2.7
(-3) 		38
(2.1) 		44.4
(3) 		2.8
(-3) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 8.9
(-3)
A 		32.9
(0.3)
P 		21.1
(-1.3)
P 		15.8
(-2)
P 		52
(3)
P 		19
(-1.6)
P 		43
B 25.5
(-2.4)
P 		58.3
(3)
P 		33.4
(-1.1)
P 		34.2
(-1)
P 		51.4
(1.9)
P 		21.8
(-3)
P 		37
C 18.9
(-3)
A 		32.1
(1.7)
P 		26.4
(-0.3)
P 		33.8
(2.3)
P 		35.8
(3)
P 		28.9
(0.6)
P 		17
avr 17.8
(-3) 		41.1
(1.9) 		27
(-1.1) 		27.9
(-0.9) 		46.4
(3) 		23.2
(-1.9) 		29
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173030_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26306
Sequence Type Exemplar sequence
Representative Public ID C31818 NCBI
Target Description C31818_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=C31818 /DEF=C.elegans cDNA clone yk345d5 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a UniGene identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) C31818
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C31818 C31818_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=C31818 /DEF=C.elegans cDNA clone yk345d5 : 3prime end, single read. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_067263 5/11 Cross Hyb Matching Probes A 
SNAP00000027553 1/11 Cross Hyb Matching Probes None
GENEFINDER00000027561 5/11 Cross Hyb Matching Probes None
BE10.2 5/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:12793323-12793562(-) 79.67 79.67
Sequence
Target Sequence 
>C. ELEGANS:173030_AT
aaagctctattccagaagcctgacaaacgacgctaggcctaccagaagcctagaaagtgt
tatccatcctaataattttacttccagaaactctcccaatgctgctcaaagaatcaatca
ataaatccagaaaaaggtgacctggaacgggctccagaaattgcatcgatctcgaaaaat
gttcaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAGCTCTATTCCAGAAGCCTGACA 115 125 79 Antisense
GAAGCCTGACAAACGACGCTAGGCC 174 343 93 Antisense
CGACGCTAGGCCTACCAGAAGCCTA 478 251 106 Antisense
AGCCTAGAAAGTGTTATCCATCCTA 97 83 125 Antisense
ATCCATCCTAATAATTTTACTTCCA 13 41 140 Antisense
TTTTACTTCCAGAAACTCTCCCAAT 570 673 154 Antisense
ACTCTCCCAATGCTGCTCAAAGAAT 33 101 168 Antisense
AAGGTGACCTGGAACGGGCTCCAGA 8 159 212 Antisense
GAACGGGCTCCAGAAATTGCATCGA 504 347 223 Antisense
GGCTCCAGAAATTGCATCGATCTCG 659 539 228 Antisense
GCATCGATCTCGAAAAATGTTCAAT 704 309 241 Antisense
Sequence Source Affymetrix Proprietary Database