[Home] | [Total List]

[173029_s_at] nucleotide binding protein

Description C32471_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=C32471 /DEF=C.elegans cDNA clone yk331c8 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 75      6grp_high1_10_10 > 56      4grp_highest_8_8 > 23      4grp_high_8_8 > 06      6grp_highest_nonorm > 82      6grp_total > 57      4grp_total > 02      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 464
1 2 3 4 range
A 300.9
(-3)
P 		453.4
(-0.5)
P 		313.1
(-2.8)
P 		668.4
(3)
P 		368
B 362
(-1.5)
P 		270.3
(-3)
P 		338.1
(-1.9)
P 		633.3
(3)
P 		363
C 363.1
(-2.2)
P 		304.1
(-3)
P 		353
(-2.3)
P 		734.5
(3)
P 		430
avr 342
(-2.9) 		342.6
(-2.9) 		334.7
(-3) 		678.7
(3) 		344

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 166
1 2 3 4 5 6 range
A 336
(0)
P 		301.9
(-1.3)
P 		416.2
(3)
P 		255.1
(-3)
P 		266.2
(-2.6)
P 		385.3
(1.8)
P 		161
B 351.4
(-0.1)
P 		332.5
(-1)
P 		289.4
(-2.9)
P 		310.3
(-1.9)
P 		286.6
(-3)
P 		421.5
(3)
P 		135
C 307.3
(-1.3)
P 		318.4
(-0.7)
P 		273
(-3)
P 		322.1
(-0.5)
P 		300.8
(-1.6)
P 		391.7
(3)
P 		119
avr 331.6
(-0.5) 		317.6
(-1.3) 		326.2
(-0.8) 		295.8
(-2.4) 		284.5
(-3) 		399.5
(3) 		115
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 68
1 2 3 4 range
A 109.6
(3)
P 		98.4
(0.6)
P 		81.9
(-3)
P 		97.8
(0.4)
P 		28
B 115.5
(1.3)
P 		66.8
(-3)
P 		78.3
(-2)
P 		135
(3)
P 		68
C 120.2
(2.4)
P 		87.4
(-3)
P 		123
(2.9)
P 		123.8
(3)
P 		36
avr 115.1
(2.3) 		84.2
(-3) 		94.4
(-1.2) 		118.9
(3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 95
1 2 3 4 5 6 range
A 61.9
(-3)
P 		107.4
(3)
P 		90.6
(0.8)
P 		64.7
(-2.6)
P 		80.3
(-0.6)
P 		93.8
(1.2)
P 		46
B 122.3
(0.6)
P 		110.7
(-0.2)
P 		70.3
(-3)
P 		82.2
(-2.2)
P 		116.4
(0.2)
P 		157.2
(3)
P 		87
C 113.9
(1.4)
P 		97.1
(-0.1)
P 		69.5
(-2.6)
P 		64.8
(-3)
P 		97.3
(-0.1)
P 		131.1
(3)
P 		66
avr 99.4
(0) 		105.1
(0.6) 		76.8
(-2.3) 		70.6
(-3) 		98
(-0.1) 		127.4
(3) 		57
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173029_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26319
Sequence Type Exemplar sequence
Representative Public ID C32471 NCBI
Target Description C32471_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=C32471 /DEF=C.elegans cDNA clone yk331c8 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060252(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060252 NCBI Caenorhabditis elegans F10G8.6 (F10G8.6) mRNA, complete cds. 11/11 A 
SNAP00000036096 ENSEMBL cdna:SNAP chromosome:CEL140:I:10054570:10055995:1 11/11 None
GENEFINDER00000036103 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:10054570:10055995:1 11/11 None
F10G8.6 ENSEMBL cdna:known chromosome:CEL140:I:10054565:10056148:1 gene:F10G8.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10055731-10055960(+) 76.33 76.33
Public Domain and Genome References
Gene Title nucleotide binding protein
Ensembl F10G8.6
Entrez Gene 172868 Entrez gene
SwissProt Q93459 EMBL-EBI
WormBase CE30749 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1584054_AT similar to Nucleotide-binding protein 1 (NBP 1) cfa
CANINE_2:CFA.12389.1.A1_AT similar to Nucleotide-binding protein 1 (NBP 1) cfa
CANINE_2:CFA.18205.1.S1_S_AT similar to Nucleotide-binding protein 1 (NBP 1) cfa
CANINE_2:CFAAFFX.28948.1.S1_AT similar to Nucleotide-binding protein 1 (NBP 1) cfa
CANINE_2:CFAAFFX.28948.1.S1_S_AT similar to Nucleotide-binding protein 1 (NBP 1) cfa
DROSOPHILA_2:1637822_AT dm
DROSGENOME1:154859_AT dm
CHICKEN:GGA.5665.1.S1_AT nucleotide binding protein 1 (MinD homolog, E. coli) gga
HG-U133_PLUS_2:203978_AT nucleotide binding protein 1 (MinD homolog, E. coli) hs
HG-FOCUS:203978_AT nucleotide binding protein 1 (MinD homolog, E. coli) hs
HG-U133A_2:203978_AT nucleotide binding protein 1 (MinD homolog, E. coli) hs
HG-U133A:203978_AT nucleotide binding protein 1 (MinD homolog, E. coli) hs
HUGENEFL:U01833_AT nucleotide binding protein 1 (MinD homolog, E. coli) hs
U133_X3P:G4505336_3P_AT nucleotide binding protein 1 (MinD homolog, E. coli) hs
HG-U95AV2:37609_AT nucleotide binding protein 1 (MinD homolog, E. coli) hs
HG-U95D:77115_AT nucleotide binding protein 1 (MinD homolog, E. coli) hs
U133_X3P:HS2.127147.1.S1_3P_AT Nucleotide binding protein 1 (MinD homolog, E. coli) hs
HG-U133_PLUS_2:1563638_AT Nucleotide binding protein 1 (MinD homolog, E. coli) hs
HG-U95E:79596_AT Nucleotide binding protein 1 (MinD homolog, E. coli) hs
HG-U95C:50524_AT Nucleotide binding protein 1 (MinD homolog, E. coli) hs
HG-U95C:60715_AT Nucleotide binding protein 1 (MinD homolog, E. coli) hs
MG-U74AV2:94528_AT nucleotide binding protein 1 mm
MG-U74BV2:115240_AT nucleotide binding protein 1 mm
MOE430A:1430778_A_AT nucleotide binding protein 1 mm
MOUSE430A_2:1430778_A_AT nucleotide binding protein 1 mm
MOUSE430_2:1430778_A_AT nucleotide binding protein 1 mm
MOE430A:1418905_AT nucleotide binding protein 1 mm
MOUSE430A_2:1418905_AT nucleotide binding protein 1 mm
MOUSE430_2:1418905_AT nucleotide binding protein 1 mm
MOE430A:1418906_AT nucleotide binding protein 1 mm
MOUSE430A_2:1418906_AT nucleotide binding protein 1 mm
MOUSE430_2:1418906_AT nucleotide binding protein 1 mm
MG-U74CV2:137725_AT Nucleotide-binding protein long form (Nubp1) mm
MOUSE430_2:1457055_AT Nucleotide-binding protein long form (Nubp1) mm
MOE430B:1457055_AT Nucleotide-binding protein long form (Nubp1) mm
MG-U74BV2:163950_R_AT Nucleotide-binding protein long form (Nubp1) mm
MU19KSUBA:TC20588_AT Nucleotide-binding protein long form (Nubp1) mm
MU19KSUBA:TC20588_G_AT Nucleotide-binding protein long form (Nubp1) mm
MU19KSUBA:TC24725_AT Nucleotide-binding protein long form (Nubp1) mm
MU19KSUBB:TC32463_AT Nucleotide-binding protein long form (Nubp1) mm
RG-U34C:RC_AA819729_AT nucleotide binding protein 1 (predicted) rn
RAE230A:1371503_AT nucleotide binding protein 1 (predicted) rn
RAT230_2:1371503_AT nucleotide binding protein 1 (predicted) rn
YEAST_2:1771167_AT Essential nuclear protein, evolutionarily conserved putative ATPase; exhibits genetic interaction with CDC2 encoding the catalytic subunit of DNA polymerase delta Sc
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
166 nucleotide binding inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB02285 Hypothetical protein F10G8.6 [Caenorhabditis elegans] ref|NP_492653.2| F10G8.6 [Caenorhabditis elegans] sp|Q93459|MRPL_CAEEL Mrp-family putative nucleotide-binding protein F10G8.6 1.0E-158
blast CAE60219 Hypothetical protein CBG03788 [Caenorhabditis briggsae] 1.0E-155
blast T20728 hypothetical protein F10G8.6 - Caenorhabditis elegans 1.0E-154
blast CAB02285 Hypothetical protein F10G8.6 [Caenorhabditis elegans] ref|NP_492653.2| F10G8.6 [Caenorhabditis elegans] sp|Q93459|MRPL_CAEEL Mrp-family putative nucleotide-binding protein F10G8.6 1.0E-154
Sequence
Target Sequence 
>C. ELEGANS:173029_S_AT
catccaccggcggagctgagcaaatgtgcaaagattcgaatcttgagcttctagctcaac
tcccattggaaccagcacttgcaaaagctcttgacaatggagaagactttttcgagacaa
atccagattcaacgctggcaaaatcgtttttggatcttgctgagaaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATCCACCGGCGGAGCTGAGCAAAT 499 211 90 Antisense
ACCGGCGGAGCTGAGCAAATGTGCA 399 85 95 Antisense
GAGCAAATGTGCAAAGATTCGAATC 210 391 107 Antisense
GATTCGAATCTTGAGCTTCTAGCTC 263 433 122 Antisense
TTCTAGCTCAACTCCCATTGGAACC 170 691 138 Antisense
CAACTCCCATTGGAACCAGCACTTG 235 187 146 Antisense
CATTGGAACCAGCACTTGCAAAAGC 217 209 153 Antisense
ACTTTTTCGAGACAAATCCAGATTC 253 103 195 Antisense
GACAAATCCAGATTCAACGCTGGCA 134 367 205 Antisense
TCAACGCTGGCAAAATCGTTTTTGG 592 629 218 Antisense
TCGTTTTTGGATCTTGCTGAGAAAG 219 603 233 Antisense
Sequence Source Affymetrix Proprietary Database