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[173028_s_at]

Description C34630_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=C34630 /DEF=C.elegans cDNA clone yk413c5 : 3prime end, single read.
Cluster 6grp_total > 96      4grp_total > 02      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 893
1 2 3 4 range
A 160.4
(-2.4)
A 		221.7
(-1.6)
A 		112.9
(-3)
A 		590.2
(3)
P 		477
B 182.3
(-2.7)
A 		143.2
(-3)
A 		195.7
(-2.6)
A 		878.8
(3)
P 		736
C 175.6
(-2.8)
A 		172.2
(-2.8)
A 		146
(-3)
A 		1006.1
(3)
P 		860
avr 172.8
(-2.8) 		179
(-2.8) 		151.5
(-3) 		825
(3) 		674

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 275
1 2 3 4 5 6 range
A 171.6
(-3)
A 		192.1
(-2.5)
A 		299.5
(0.1)
A 		309.8
(0.3)
P 		390.6
(2.3)
P 		421.3
(3)
P 		250
B 185.6
(-2.9)
M 		185.3
(-2.9)
A 		182.8
(-3)
A 		246.5
(-1.2)
M 		390.6
(3)
P 		391.8
(3)
P 		209
C 153.6
(-2.8)
A 		213.5
(-1.5)
A 		146.4
(-3)
A 		215
(-1.5)
P 		413.8
(2.9)
P 		416.7
(3)
P 		270
avr 170.3
(-3) 		197
(-2.3) 		209.6
(-2) 		257.1
(-0.8) 		398.3
(2.7) 		409.9
(3) 		240
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 158
1 2 3 4 range
A 58.4
(0)
A 		48.1
(-1)
A 		29.5
(-3)
A 		86.4
(3)
P 		57
B 58.1
(-2.1)
A 		35.4
(-3)
A 		45.3
(-2.6)
A 		187.3
(3)
P 		152
C 58.1
(-2.6)
A 		49.5
(-3)
A 		50.9
(-2.9)
A 		169.6
(3)
P 		120
avr 58.2
(-2.1) 		44.3
(-2.9) 		41.9
(-3) 		147.8
(3) 		106

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 127
1 2 3 4 5 6 range
A 31.6
(-3)
A 		68.3
(-0.4)
A 		65.2
(-0.7)
A 		78.6
(0.3)
P 		117.9
(3)
P 		102.6
(1.9)
P 		86
B 64.6
(-1.9)
M 		61.7
(-2.1)
A 		44.4
(-3)
A 		65.3
(-1.9)
M 		158.7
(3)
P 		146.1
(2.3)
P 		114
C 56.9
(-1.8)
A 		65.1
(-1.4)
A 		37.3
(-3)
A 		43.2
(-2.7)
P 		133.9
(2.7)
P 		139.5
(3)
P 		102
avr 51
(-2.9) 		65
(-1.9) 		49
(-3) 		62.4
(-2.1) 		136.8
(3) 		129.4
(2.5) 		88
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173028_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26347
Sequence Type Exemplar sequence
Representative Public ID C34630 NCBI
Target Description C34630_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=C34630 /DEF=C.elegans cDNA clone yk413c5 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072428(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072428 NCBI Caenorhabditis elegans C13F10.5 (C13F10.5) mRNA, complete cds. 11/11 None
GENEFINDER00000004762 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7208545:7221582:-1 10/11 None
C13F10.5 ENSEMBL cdna:known chromosome:CEL140:V:7217676:7221633:-1 gene:C13F10.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000004758 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7217676-7220723(-) 98.33 98.33
Public Domain and Genome References
Gene Title
Ensembl C13F10.5
Entrez Gene 179110 Entrez gene
SwissProt O01486 EMBL-EBI
WormBase CE27682 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC47965 Hypothetical protein C13F10.4 [Caenorhabditis elegans] ref|NP_504828.1| C13F10.4 [Caenorhabditis elegans] 0.0
blast CAE72021 Hypothetical protein CBG19103 [Caenorhabditis briggsae] 0.0
blast XP_863392 PREDICTED: similar to CG2747-PB, isoform B isoform 7 [Canis familiaris] 0.0
blast AAC47962 Hypothetical protein C13F10.5 [Caenorhabditis elegans] ref|NP_504829.1| C13F10.5 [Caenorhabditis elegans] 2.0E-66
blast XP_419479 PREDICTED: similar to hypothetical protein FLJ11101 [Gallus gallus] 4.0E-9
blast NP_060792 hypothetical protein LOC55776 [Homo sapiens] emb|CAB71176.1| chromosome 6 open reading frame 64 [Homo sapiens] gb|AAH22007.1| Hypothetical protein LOC55776 [Homo sapiens] dbj|BAA92004.1| unnamed protein product [Homo sapiens] sp|Q9NPB0|CF064_HUMAN Protein C6orf64 6.0E-9
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504829.1 1 81-103
C13F10.5 1 81-103
GENEFINDER00000004762 1 108-130
Sequence
Target Sequence 
>C. ELEGANS:173028_S_AT
tagttggtcaagctctggctgcatgggtccaattcggagcggtcttcttcattgtatcac
tcattcttttcacatattggaacactggaagacggcgacgcggcgagatgagtgcctatt
cagtattcaacgacaattgtgagcgtctcgctggaagtatgactgctgaacatttcgaaa
gagacatgctccgacagaggcggtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAGTTGGTCAAGCTCTGGCTGCATG 375 653 14 Antisense
TCTGGCTGCATGGGTCCAATTCGGA 556 607 27 Antisense
TCCAATTCGGAGCGGTCTTCTTCAT 257 587 41 Antisense
AAGACGGCGACGCGGCGAGATGAGT 499 151 102 Antisense
GACGCGGCGAGATGAGTGCCTATTC 67 381 110 Antisense
GAGTGCCTATTCAGTATTCAACGAC 590 399 123 Antisense
ACGACAATTGTGAGCGTCTCGCTGG 409 91 143 Antisense
GCGTCTCGCTGGAAGTATGACTGCT 680 291 156 Antisense
GAAGTATGACTGCTGAACATTTCGA 89 335 167 Antisense
GAACATTTCGAAAGAGACATGCTCC 383 351 181 Antisense
GAGACATGCTCCGACAGAGGCGGTG 287 393 194 Antisense
Sequence Source Affymetrix Proprietary Database