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[173026_at]

Description C33337_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=C33337 /DEF=C.elegans cDNA clone yk344d4 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 40      6grp_high1_10_10 > 05      4grp_highest_8_8 > 47      4grp_high_8_8 > 11      6grp_highest_nonorm > 40      6grp_total > 15      4grp_total > 13      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 534
1 2 3 4 range
A 672.4
(-1.2)
P 		536.7
(-3)
P 		569.8
(-2.6)
P 		1000.7
(3)
P 		464
B 823.8
(1.4)
P 		703.1
(-0.3)
P 		518.9
(-3)
P 		935.5
(3)
P 		417
C 740.2
(0.4)
P 		667.7
(-0.5)
P 		466.4
(-3)
P 		946
(3)
P 		480
avr 745.5
(0.1) 		635.8
(-1.4) 		518.4
(-3) 		960.7
(3) 		442

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 726
1 2 3 4 5 6 range
A 1048.6
(3)
P 		643.4
(-0.3)
P 		673.3
(-0.1)
P 		494.2
(-1.6)
P 		461
(-1.9)
P 		322.3
(-3)
P 		726
B 922.4
(3)
P 		829.1
(1.9)
P 		591.2
(-0.8)
P 		405.7
(-3)
P 		504.8
(-1.8)
P 		426.1
(-2.8)
P 		517
C 976.7
(3)
P 		829.6
(1.6)
P 		494.9
(-1.6)
P 		417.9
(-2.3)
P 		342.7
(-3)
P 		368.7
(-2.8)
P 		634
avr 982.6
(3) 		767.4
(0.9) 		586.5
(-0.9) 		439.3
(-2.3) 		436.2
(-2.4) 		372.4
(-3) 		610
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 146
1 2 3 4 range
A 244.8
(3)
P 		116.5
(-3)
P 		149
(-1.5)
P 		146.5
(-1.6)
P 		128
B 262.7
(3)
P 		173.7
(-0.7)
P 		120.2
(-3)
P 		199.4
(0.3)
P 		143
C 245
(3)
P 		192
(-0.7)
P 		162.5
(-2.8)
P 		159.5
(-3)
P 		86
avr 250.8
(3) 		160.7
(-2.1) 		143.9
(-3) 		168.5
(-1.6) 		107

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 284
1 2 3 4 5 6 range
A 193.3
(1.6)
P 		228.8
(3)
P 		146.6
(-0.3)
P 		125.3
(-1.1)
P 		139.1
(-0.6)
P 		78.5
(-3)
P 		150
B 321
(3)
P 		276
(1.7)
P 		143.6
(-2)
P 		107.5
(-3)
P 		205.1
(-0.3)
P 		158.9
(-1.6)
P 		214
C 362
(3)
P 		253.1
(0.6)
P 		126
(-2.1)
P 		84
(-3)
P 		110.9
(-2.4)
P 		123.4
(-2.1)
P 		278
avr 292.1
(3) 		252.6
(1.7) 		138.7
(-1.9) 		105.6
(-3) 		151.7
(-1.5) 		120.3
(-2.5) 		187
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173026_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26326
Sequence Type Exemplar sequence
Representative Public ID C33337 NCBI
Target Description C33337_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=C33337 /DEF=C.elegans cDNA clone yk344d4 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076573(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076573 NCBI Caenorhabditis elegans F46G11.4 (F46G11.4) mRNA, complete cds. 10/11 None
F46G11.4 ENSEMBL cdna:known chromosome:CEL140:X:5797271:5798733:-1 gene:F46G11.4 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000029327 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5797341-5798733(-) 86.33 86.33
Public Domain and Genome References
Gene Title
Ensembl F46G11.4
Entrez Gene 180846 Entrez gene
SwissProt Q95ZT4 EMBL-EBI
WormBase CE28337 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
4867 serine-type endopeptidase inhibitor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK70653 Hypothetical protein F46G11.4 [Caenorhabditis elegans] ref|NP_508974.1| F46G11.4 [Caenorhabditis elegans] 2.0E-15
blast CAE68802 Hypothetical protein CBG14752 [Caenorhabditis briggsae] 1.0E-12
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508974.1 1 10-32
F46G11.4 1 10-32
Sequence
Target Sequence 
>C. ELEGANS:173026_AT
gaattcggcacggaggcataataaaccaacttgatgggtgccgttatttctcaactcgga
tttaaccaaccgttcttacttgcattggccataatagtaattcttctcgggctgacagta
tttgccgttggtcatgataacaatgaaaccgtctgtgattatgttccaattccacaaatt
cggatacttcccacatctgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATTCGGCACGGAGGCATAATAAA 271 325 38 Antisense
AAACCAACTTGATGGGTGCCGTTAT 121 125 60 Antisense
GTGCCGTTATTTCTCAACTCGGATT 12 477 75 Antisense
TTAACCAACCGTTCTTACTTGCATT 629 681 99 Antisense
GTTCTTACTTGCATTGGCCATAATA 635 441 109 Antisense
ATAGTAATTCTTCTCGGGCTGACAG 207 21 131 Antisense
GGGCTGACAGTATTTGCCGTTGGTC 244 493 146 Antisense
GTATTTGCCGTTGGTCATGATAACA 63 451 155 Antisense
GAAACCGTCTGTGATTATGTTCCAA 242 359 182 Antisense
GATTATGTTCCAATTCCACAAATTC 497 429 194 Antisense
AAATTCGGATACTTCCCACATCTGC 35 117 213 Antisense
Sequence Source Affymetrix Proprietary Database