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[173025_s_at]

Description C34328_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=C34328 /DEF=C.elegans cDNA clone yk399e1 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 33      6grp_high1_10_10 > 32      4grp_highest_8_8 > 13      4grp_high_8_8 > 23      6grp_highest_nonorm > 90      6grp_total > 21      4grp_total > 16      6grp_highest_sub > 02      6grp_high1_sub > 02_03      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 117
1 2 3 4 range
A 125
(-2.3)
P 		114.2
(-3)
P 		153.9
(-0.5)
P 		208
(3)
P 		94
B 90.8
(-3)
P 		132.6
(-0.1)
P 		146.4
(0.9)
P 		177
(3)
P 		86
C 134.5
(-3)
P 		151.4
(-1.5)
P 		179.5
(0.9)
P 		204.2
(3)
P 		70
avr 116.8
(-3) 		132.7
(-1.8) 		159.9
(0.2) 		196.4
(3) 		80

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 110
1 2 3 4 5 6 range
A 172.4
(-1.3)
P 		165.3
(-2.2)
P 		208.1
(3)
P 		167.3
(-2)
P 		169.7
(-1.7)
P 		158.7
(-3)
P 		49
B 197.3
(-0.2)
P 		237.3
(3)
P 		220.4
(1.7)
P 		161.9
(-3)
P 		184.5
(-1.2)
P 		187.2
(-1)
P 		75
C 182.4
(0.1)
P 		233.2
(3)
P 		175.1
(-0.3)
P 		188.4
(0.5)
P 		127.4
(-3)
P 		132.2
(-2.7)
P 		106
avr 184
(-0.2) 		211.9
(3) 		201.2
(1.8) 		172.5
(-1.5) 		160.5
(-2.9) 		159.4
(-3) 		53
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 45.5
(3)
P 		24.8
(-3)
P 		40.2
(1.5)
P 		30.5
(-1.3)
P 		21
B 29
(-3)
P 		32.7
(-0.4)
P 		33.9
(0.4)
P 		37.7
(3)
P 		9
C 44.5
(-0.9)
P 		43.5
(-1.1)
P 		62.6
(3)
P 		34.4
(-3)
P 		28
avr 39.7
(0) 		33.7
(-3) 		45.6
(3) 		34.2
(-2.7) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 31.8
(-3)
P 		58.8
(3)
P 		45.3
(-0)
P 		42.4
(-0.6)
P 		51.2
(1.3)
P 		38.6
(-1.5)
P 		27
B 68.7
(1.3)
P 		79
(3)
P 		53.5
(-1.2)
P 		42.9
(-3)
P 		75
(2.3)
P 		69.8
(1.5)
P 		36
C 67.6
(2.4)
P 		71.2
(3)
P 		44.6
(-1.8)
P 		37.9
(-3)
P 		41.2
(-2.4)
P 		44.3
(-1.8)
P 		33
avr 56
(0.1) 		69.7
(3) 		47.8
(-1.6) 		41.1
(-3) 		55.8
(0.1) 		50.9
(-0.9) 		29
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173025_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26336
Sequence Type Exemplar sequence
Representative Public ID C34328 NCBI
Target Description C34328_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=C34328 /DEF=C.elegans cDNA clone yk399e1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071840(11), NM_171926(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071840 NCBI Caenorhabditis elegans Y61A9LA.3a (Y61A9LA.3) mRNA, complete cds. 11/11 A 
NM_171926 NCBI Caenorhabditis elegans Y61A9LA.3c (Y61A9LA.3) mRNA, complete cds. 11/11 None
GENEFINDER00000010112 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4573814:4579850:1 11/11 None
Y61A9LA.3c ENSEMBL cdna:known chromosome:CEL140:V:4570957:4579927:1 gene:Y61A9LA.3 11/11 None
Y61A9LA.3a ENSEMBL cdna:known chromosome:CEL140:V:4570957:4579949:1 gene:Y61A9LA.3 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000010097 1/11 Cross Hyb Matching Probes None
SNAP00000010099 7/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
178848 3 2 NM_071840 173025_s_at (11), 177101_at (9)
NM_171926 173025_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4578816-4579881(+) 100.0 100.0
Public Domain and Genome References
Ensembl Y61A9LA.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60843 Hypothetical protein Y61A9LA.3a [Caenorhabditis elegans] ref|NP_504241.1| Y61A9LA.3a [Caenorhabditis elegans] 0.0
blast AAM48560 Hypothetical protein Y61A9LA.3c [Caenorhabditis elegans] ref|NP_741528.1| Y61A9LA.3c [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:173025_S_AT
gttgtcgtcatcggtaccgatgagaagggatgaggttcgacgtgtgacagttggcgacat
gcgtcttcgtagtctttcccgttctgaacaacgagatctccgtgtcggaaataagattat
tgctcaggattccaagaccggaacctggacgctcgctactgttgtgaagattcgtgaaga
tcgggttacggtatcagtggcaaatggtacttggaaaaaggacattgatgatttgtacaa
ggaggacgatggaagtctggtatactga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTGTCGTCATCGGTACCGATGAGA 599 435 14 Antisense
TCGACGTGTGACAGTTGGCGACATG 198 601 50 Antisense
TGACAGTTGGCGACATGCGTCTTCG 274 571 58 Antisense
TAGTCTTTCCCGTTCTGAACAACGA 72 653 83 Antisense
GAACAACGAGATCTCCGTGTCGGAA 160 353 99 Antisense
TAAGATTATTGCTCAGGATTCCAAG 73 633 125 Antisense
GATTCCAAGACCGGAACCTGGACGC 275 433 141 Antisense
GACGCTCGCTACTGTTGTGAAGATT 618 379 161 Antisense
GAAGATTCGTGAAGATCGGGTTACG 544 337 179 Antisense
GATCGGGTTACGGTATCAGTGGCAA 253 379 192 Antisense
GGACGATGGAAGTCTGGTATACTGA 160 523 257 Antisense
Sequence Source Affymetrix Proprietary Database