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[173024_s_at]

Description C33916_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=C33916 /DEF=C.elegans cDNA clone yk389d2 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 56      4grp_high_8_8 > 42      6grp_total > 46      4grp_total > 53      6grp_high1_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 103
1 2 3 4 range
A 172
(2)
P 		184.5
(3)
P 		155.3
(0.7)
P 		108.1
(-3)
A 		76
B 164.1
(3)
P 		161.6
(2.8)
P 		139.3
(0.9)
P 		94.8
(-3)
P 		69
C 198
(3)
P 		132.5
(-3)
P 		150.1
(-1.4)
P 		175.4
(0.9)
P 		66
avr 178
(3) 		159.5
(0.9) 		148.2
(-0.4) 		126.1
(-3) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 114
1 2 3 4 5 6 range
A 97.7
(-2.1)
P 		142.4
(0.5)
P 		119
(-0.9)
P 		132.8
(-0.1)
P 		81.6
(-3)
P 		186.3
(3)
P 		105
B 152.7
(0.1)
P 		124.6
(-1.9)
P 		130.5
(-1.5)
P 		108.2
(-3)
P 		114.7
(-2.6)
P 		195.3
(3)
P 		87
C 164.7
(3)
P 		160.9
(2.7)
P 		121
(-0.1)
P 		81.1
(-3)
A 		134.1
(0.8)
P 		103.1
(-1.4)
P 		84
avr 138.4
(0.4) 		142.6
(0.9) 		123.5
(-1.2) 		107.4
(-3) 		110.1
(-2.7) 		161.6
(3) 		54
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 62.6
(3)
P 		40
(0.1)
P 		40.6
(0.2)
P 		15.8
(-3)
A 		47
B 52.3
(3)
P 		39.9
(0.7)
P 		32.3
(-0.7)
P 		20.2
(-3)
P 		32
C 65.5
(3)
P 		38.1
(-1.6)
P 		52.3
(0.8)
P 		29.6
(-3)
P 		36
avr 60.1
(3) 		39.3
(-0.3) 		41.7
(0.1) 		21.9
(-3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 18
(-3)
P 		50.6
(3)
P 		25.9
(-1.5)
P 		33.7
(-0.1)
P 		24.6
(-1.8)
P 		45.3
(2)
P 		33
B 53.1
(0.3)
P 		41.5
(-1.3)
P 		31.7
(-2.6)
P 		28.7
(-3)
P 		46.6
(-0.6)
P 		72.8
(3)
P 		44
C 61.1
(3)
P 		49.1
(1.4)
P 		30.8
(-1.1)
P 		16.3
(-3)
A 		43.4
(0.6)
P 		34.5
(-0.6)
P 		45
avr 44.1
(1.3) 		47.1
(2.1) 		29.5
(-2.2) 		26.2
(-3) 		38.2
(-0.1) 		50.9
(3) 		25
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173024_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26332
Sequence Type Exemplar sequence
Representative Public ID C33916 NCBI
Target Description C33916_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=C33916 /DEF=C.elegans cDNA clone yk389d2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067756(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067756 NCBI Caenorhabditis elegans Y76B12C.7 (Y76B12C.7) mRNA, complete cds. 11/11 None
GENEFINDER00000007763 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:2009153:2011593:-1 11/11 None
Y76B12C.7 ENSEMBL cdna:known chromosome:CEL140:IV:2009038:2032991:-1 gene:Y76B12C.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000007754 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:2009107-2010598(-) 99.67 99.67
Public Domain and Genome References
Gene Title
Ensembl Y76B12C.7
Entrez Gene 177003 Entrez gene
SwissProt Q9N4C2 EMBL-EBI
WormBase CE29932 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:248418_AT cleavage and polyadenylation specificity factor (CPSF) A subunit C-terminal domain-containing protein at
CANINE_2:CFAAFFX.3312.1.S1_S_AT similar to cleavage and polyadenylation specific factor 1 cfa
DROSOPHILA_2:1636774_AT cleavage and polyadenylation specificity factor dm
DROSGENOME1:154835_AT cleavage and polyadenylation specificity factor dm
HG-U133A_2:33132_AT cleavage and polyadenylation specific factor 1, 160kDa hs
HG-FOCUS:33132_AT cleavage and polyadenylation specific factor 1, 160kDa hs
HG-U133_PLUS_2:33132_AT cleavage and polyadenylation specific factor 1, 160kDa hs
HG-U133A:33132_AT cleavage and polyadenylation specific factor 1, 160kDa hs
HG-U95AV2:33132_AT cleavage and polyadenylation specific factor 1, 160kDa hs
HUGENEFL:U37012_AT cleavage and polyadenylation specific factor 1, 160kDa hs
HG-U133A:201639_S_AT cleavage and polyadenylation specific factor 1, 160kDa hs
HG-U133_PLUS_2:201639_S_AT cleavage and polyadenylation specific factor 1, 160kDa hs
HG-U133A_2:201639_S_AT cleavage and polyadenylation specific factor 1, 160kDa hs
U133_X3P:G9558724_3P_S_AT cleavage and polyadenylation specific factor 1, 160kDa hs
U133_X3P:HS.83727.0.A1_3P_S_AT cleavage and polyadenylation specific factor 1, 160kDa hs
U133_X3P:HS.83727.0.A1_3P_A_AT cleavage and polyadenylation specific factor 1, 160kDa hs
HG-U133A_2:201638_S_AT cleavage and polyadenylation specific factor 1, 160kDa hs
HG-U133_PLUS_2:201638_S_AT cleavage and polyadenylation specific factor 1, 160kDa hs
HG-U133A:201638_S_AT cleavage and polyadenylation specific factor 1, 160kDa hs
MG-U74BV2:113645_S_AT cleavage and polyadenylation specific factor 1 mm
MG-U74BV2:113646_I_AT cleavage and polyadenylation specific factor 1 mm
MOE430A:1417665_A_AT cleavage and polyadenylation specific factor 1 mm
MOUSE430A_2:1417665_A_AT cleavage and polyadenylation specific factor 1 mm
MOUSE430_2:1417665_A_AT cleavage and polyadenylation specific factor 1 mm
MG-U74BV2:108905_AT Cleavage and polyadenylation specific factor 1 (Cpsf1), mRNA mm
MU19KSUBA:TC22433_AT Cleavage and polyadenylation specific factor 1 (Cpsf1), mRNA mm
MU19KSUBA:TC22433_G_AT Cleavage and polyadenylation specific factor 1 (Cpsf1), mRNA mm
MU19KSUBB:TC26138_AT Cleavage and polyadenylation specific factor 1 (Cpsf1), mRNA mm
MU19KSUBB:TC30480_AT Cleavage and polyadenylation specific factor 1 (Cpsf1), mRNA mm
MU19KSUBC:TC37623_AT Cleavage and polyadenylation specific factor 1 (Cpsf1), mRNA mm
MU19KSUBC:TC37623_G_AT Cleavage and polyadenylation specific factor 1 (Cpsf1), mRNA mm
MU19KSUBC:TC39801_AT Cleavage and polyadenylation specific factor 1 (Cpsf1), mRNA mm
RAE230A:1373531_AT cleavage and polyadenylation specific factor 1, 160kDa (predicted) rn
RAT230_2:1373531_AT cleavage and polyadenylation specific factor 1, 160kDa (predicted) rn
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF36067 Hypothetical protein Y76B12C.7 [Caenorhabditis elegans] ref|NP_500157.2| Y76B12C.7 [Caenorhabditis elegans] sp|Q9N4C2|CPSF1_CAEEL Probable cleavage and polyadenylation specificity factor, 160 kDa subunit (CPSF 160 kDa subunit) 0.0
blast CAE70288 Hypothetical protein CBG16808 [Caenorhabditis briggsae] 0.0
blast XP_624382 PREDICTED: similar to ENSANGP00000018461 [Apis mellifera] 0.0
blast AAF36067 Hypothetical protein Y76B12C.7 [Caenorhabditis elegans] ref|NP_500157.2| Y76B12C.7 [Caenorhabditis elegans] sp|Q9N4C2|CPSF1_CAEEL Probable cleavage and polyadenylation specificity factor, 160 kDa subunit (CPSF 160 kDa subunit) 7.0E-62
blast CAE70288 Hypothetical protein CBG16808 [Caenorhabditis briggsae] 5.0E-54
blast XP_624382 PREDICTED: similar to ENSANGP00000018461 [Apis mellifera] 2.0E-12
Protein Domains
Database ID Description E-Value
Pfam IPR004871 EMBL-EBI CPSF A subunit, C-terminal 1.4E-56
Pfam IPR004871 EMBL-EBI CPSF A subunit, C-terminal 1.0E-6
Sequence
Target Sequence 
>C. ELEGANS:173024_S_AT
acattcatcggaagtgtgacaccacaaatcgctggacttcatatcaagggatcacgatct
gcgaacccatctcaaccgattgttaacggacgaaatgctaggaatntnatcganggagat
gttgttgaacaatatttacacttatcactttatgataaaactgatttggcgagaaggctc
ggcgttgggagatatcacataatcgatgatnngangcaanttcgcaggatggctttttat
tatta

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACATTCATCGGAAGTGTGACACCAC 436 105 17 Antisense
GTGACACCACAAATCGCTGGACTTC 14 483 32 Antisense
AATCGCTGGACTTCATATCAAGGGA 481 167 43 Antisense
ATATCAAGGGATCACGATCTGCGAA 641 17 57 Antisense
CCATCTCAACCGATTGTTAACGGAC 304 269 83 Antisense
GATTGTTAACGGACGAAATGCTAGG 275 425 94 Antisense
CAATATTTACACTTATCACTTTATG 311 181 146 Antisense
AAAACTGATTTGGCGAGAAGGCTCG 252 131 173 Antisense
GAAGGCTCGGCGTTGGGAGATATCA 161 333 189 Antisense
GGCGTTGGGAGATATCACATAATCG 372 541 197 Antisense
TTCGCAGGATGGCTTTTTATTATTA 365 693 237 Antisense
Sequence Source Affymetrix Proprietary Database