[Home] | [Total List]

[173021_s_at]

Description C56530_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=C56530 /DEF=C.elegans cDNA clone yk262h7 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 34      4grp_high_8_8 > 33      6grp_total > 0      4grp_total > 38      6grp_total_sub > Hat      6grp_high1_sub > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 244
1 2 3 4 range
A 305.3
(3)
P 		190.7
(-0.9)
M 		138.3
(-2.7)
A 		128.9
(-3)
P 		176
B 339
(3)
P 		146.7
(-1.7)
M 		94.8
(-3)
A 		228.4
(0.3)
P 		244
C 335.2
(3)
P 		200.5
(-1.7)
P 		162.5
(-3)
P 		224.6
(-0.8)
P 		173
avr 326.5
(3) 		179.3
(-1.5) 		131.9
(-3) 		194
(-1.1) 		195

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 233
1 2 3 4 5 6 range
A 183.9
(-1.5)
P 		250.5
(3)
P 		163.4
(-2.8)
P 		192
(-0.9)
P 		160.9
(-3)
P 		188.3
(-1.2)
P 		90
B 260
(3)
P 		246.5
(2.2)
P 		189.1
(-1.3)
P 		160.9
(-3)
P 		222.2
(0.7)
P 		257.2
(2.8)
P 		99
C 169.7
(-1.7)
P 		350.3
(3)
P 		117.7
(-3)
A 		223.7
(-0.3)
P 		164.3
(-1.8)
M 		259.9
(0.7)
P 		233
avr 204.5
(-0.7) 		282.4
(3) 		156.7
(-3) 		192.2
(-1.3) 		182.5
(-1.8) 		235.1
(0.7) 		126
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 92
1 2 3 4 range
A 111.2
(3)
P 		41.4
(-1.5)
M 		36.2
(-1.9)
A 		18.9
(-3)
P 		92
B 108.1
(3)
P 		36.2
(-2)
M 		22
(-3)
A 		48.7
(-1.1)
P 		86
C 111
(3)
P 		57.6
(-1.4)
P 		56.6
(-1.5)
P 		37.9
(-3)
P 		73
avr 110.1
(3) 		45.1
(-2.2) 		38.3
(-2.8) 		35.2
(-3) 		75

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 77
1 2 3 4 5 6 range
A 33.9
(-3)
P 		89.1
(3)
P 		35.6
(-2.8)
P 		48.7
(-1.4)
P 		48.5
(-1.4)
P 		45.8
(-1.7)
P 		55
B 90.5
(2.4)
P 		82.1
(1.4)
P 		45.9
(-2.6)
P 		42.6
(-3)
P 		90.3
(2.4)
P 		95.9
(3)
P 		53
C 62.9
(-0.4)
P 		106.9
(3)
P 		30
(-3)
A 		45
(-1.8)
P 		53.2
(-1.2)
M 		87
(1.4)
P 		77
avr 62.4
(-0.3) 		92.7
(3) 		37.2
(-3) 		45.4
(-2.1) 		64
(-0.1) 		76.2
(1.2) 		56
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173021_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26565
Sequence Type Exemplar sequence
Representative Public ID C56530 NCBI
Target Description C56530_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=C56530 /DEF=C.elegans cDNA clone yk262h7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171090(11), NM_171091(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171090 NCBI Caenorhabditis elegans H06I04.1a (H06I04.1) mRNA, complete cds. 11/11 A 
NM_171091 NCBI Caenorhabditis elegans H06I04.1b (H06I04.1) mRNA, complete cds. 11/11 A 
H06I04.1a.1 ENSEMBL cdna:known chromosome:CEL140:III:3091837:3100458:1 gene:H06I04.1 11/11 None
H06I04.1a.2 ENSEMBL cdna:known chromosome:CEL140:III:3091840:3100458:1 gene:H06I04.1 11/11 None
H06I04.1b ENSEMBL cdna:known chromosome:CEL140:III:3091862:3100428:1 gene:H06I04.1 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_171092 7/11 Cross Hyb Matching Probes A 
GENEFINDER00000025129 7/11 Cross Hyb Matching Probes None
H06I04.1c.1 7/11 Cross Hyb Matching Probes A 
H06I04.1c.2 7/11 Cross Hyb Matching Probes A 
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
175416 3 2 NM_171090 173021_s_at (11)
NM_171091 173021_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:3099168-3100389(+) 99.67 99.67
Public Domain and Genome References
Ensembl H06I04.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF39866 Hypothetical protein H06I04.1a [Caenorhabditis elegans] ref|NP_741103.1| H06I04.1a [Caenorhabditis elegans] 0.0
blast AAM48540 Hypothetical protein H06I04.1b [Caenorhabditis elegans] ref|NP_741104.1| H06I04.1b [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:173021_S_AT
acccaatccacgattcaagcctatgccgacgataatgataggcttgaagatcaatgtcga
caggctcagcggaccattttgacgttaaattcaaaattagaggctcaaggcatcgatntn
gtcaccacaaaacgcacgttacgggctnttcgcgagaccaatgaagcaagatctggacca
tttta

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACCCAATCCACGATTCAAGCCTATG 125 91 40 Antisense
CACGATTCAAGCCTATGCCGACGAT 265 199 48 Antisense
CAAGCCTATGCCGACGATAATGATA 675 185 55 Antisense
GATAGGCTTGAAGATCAATGTCGAC 295 425 76 Antisense
TCAATGTCGACAGGCTCAGCGGACC 230 633 90 Antisense
GCTCAGCGGACCATTTTGACGTTAA 519 301 103 Antisense
GCGGACCATTTTGACGTTAAATTCA 36 291 108 Antisense
AAAATTAGAGGCTCAAGGCATCGAT 407 133 132 Antisense
GTCACCACAAAACGCACGTTACGGG 13 467 160 Antisense
TTCGCGAGACCAATGAAGCAAGATC 630 693 188 Antisense
ATGAAGCAAGATCTGGACCATTTTA 497 39 200 Antisense
Sequence Source Affymetrix Proprietary Database