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[173020_s_at]

Description CEC4143_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=C10414 /DEF=C.elegans cDNA clone yk145h1 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 76      6grp_high1_10_10 > 66      4grp_highest_8_8 > 35      4grp_high_8_8 > 56      6grp_highest_nonorm > 82      6grp_total > 67      4grp_total > 63      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 213
1 2 3 4 range
A 482.4
(3)
P 		269.6
(-3)
P 		338
(-1.1)
P 		304.7
(-2)
P 		213
B 435.2
(3)
P 		289.5
(-3)
P 		397.1
(1.4)
P 		411.2
(2)
P 		146
C 413.8
(0.9)
P 		316.1
(-3)
P 		465
(3)
P 		350.6
(-1.6)
P 		149
avr 443.8
(3) 		291.7
(-3) 		400
(1.3) 		355.5
(-0.5) 		152

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 415
1 2 3 4 5 6 range
A 294.6
(-2.5)
P 		324.7
(-1.8)
P 		277.3
(-3)
P 		371.9
(-0.5)
P 		350
(-1.1)
P 		505.3
(3)
P 		228
B 382.4
(-1.1)
P 		331.2
(-1.8)
P 		250.3
(-3)
P 		375
(-1.2)
P 		276.2
(-2.6)
P 		665.5
(3)
P 		415
C 396.3
(-0.8)
P 		273
(-3)
P 		402.7
(-0.7)
P 		317.2
(-2.2)
P 		303.7
(-2.4)
P 		606
(3)
P 		333
avr 357.8
(-2) 		309.6
(-3) 		310.1
(-3) 		354.7
(-2) 		310
(-3) 		592.3
(3) 		283
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 131
1 2 3 4 range
A 175.7
(3)
P 		58.5
(-2.4)
P 		88.4
(-1)
P 		44.6
(-3)
P 		131
B 138.8
(3)
P 		71.5
(-3)
P 		92
(-1.2)
P 		87.6
(-1.6)
P 		67
C 137
(1.5)
P 		90.9
(-1.1)
P 		162.1
(3)
P 		59.1
(-3)
P 		103
avr 150.5
(3) 		73.6
(-2.3) 		114.2
(0.5) 		63.8
(-3) 		87

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 194
1 2 3 4 5 6 range
A 54.3
(-3)
P 		115.5
(2.3)
P 		60.4
(-2.5)
P 		94.3
(0.5)
P 		105.6
(1.5)
P 		123
(3)
P 		69
B 133.1
(-0.7)
P 		110.3
(-1.4)
P 		60.8
(-3)
P 		99.3
(-1.8)
P 		112.2
(-1.4)
P 		248.2
(3)
P 		187
C 146.9
(0.6)
P 		83.3
(-2.2)
P 		102.5
(-1.3)
P 		63.8
(-3)
P 		98.3
(-1.5)
P 		202.9
(3)
P 		139
avr 111.4
(-1.1) 		103
(-1.5) 		74.6
(-3) 		85.8
(-2.4) 		105.4
(-1.4) 		191.4
(3) 		117
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173020_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27174
Sequence Type Exemplar sequence
Representative Public ID CEC4143 NCBI
Target Description CEC4143_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=C10414 /DEF=C.elegans cDNA clone yk145h1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072911(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072911 NCBI Caenorhabditis elegans T19A5.1 (T19A5.1) mRNA, complete cds. 11/11 A 
SNAP00000024601 ENSEMBL cdna:SNAP chromosome:CEL140:V:8959658:8964337:1 11/11 None
GENEFINDER00000024608 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8959658:8964337:1 11/11 None
T19A5.1.1 ENSEMBL cdna:known chromosome:CEL140:V:8959658:8964517:1 gene:T19A5.1 11/11 A 
T19A5.1.2 ENSEMBL cdna:known chromosome:CEL140:V:8959658:8964664:1 gene:T19A5.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8963031-8963271(+) 79.67 79.67
Public Domain and Genome References
Gene Title
Ensembl T19A5.1
Entrez Gene 179275 Entrez gene
SwissProt Q22554 EMBL-EBI
WormBase CE07509 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1604719_AT similar to tetratricopeptide repeat domain 17 cfa
CANINE_2:CFA.20328.1.S1_AT similar to tetratricopeptide repeat domain 17 cfa
CANINE_2:CFAAFFX.11017.1.S1_AT similar to tetratricopeptide repeat domain 17 cfa
CANINE_2:CFAAFFX.11026.1.S1_AT similar to tetratricopeptide repeat domain 17 cfa
CHICKEN:GGA.8937.1.S1_AT tetratricopeptide repeat domain 17 gga
HG-U133_PLUS_2:218972_AT tetratricopeptide repeat domain 17 hs
HG-U133A:218972_AT tetratricopeptide repeat domain 17 hs
HG-U133A_2:218972_AT tetratricopeptide repeat domain 17 hs
HG-U133_PLUS_2:244416_AT tetratricopeptide repeat domain 17 hs
HG-U133B:244416_AT tetratricopeptide repeat domain 17 hs
HG-U133_PLUS_2:232323_S_AT tetratricopeptide repeat domain 17 hs
HG-U133B:232323_S_AT tetratricopeptide repeat domain 17 hs
HU35KSUBA:RC_AA379085_AT tetratricopeptide repeat domain 17 hs
HU35KSUBA:RC_AA279068_AT tetratricopeptide repeat domain 17 hs
HU35KSUBB:RC_AA010247_AT tetratricopeptide repeat domain 17 hs
HU35KSUBB:RC_T55105_AT tetratricopeptide repeat domain 17 hs
U133_X3P:G8922741_3P_AT tetratricopeptide repeat domain 17 hs
U133_X3P:HS.311277.0.A1_3P_AT tetratricopeptide repeat domain 17 hs
U133_X3P:HS.287698.0.S1_3P_S_AT tetratricopeptide repeat domain 17 hs
U133_X3P:HS.17283.1.A2_3P_AT tetratricopeptide repeat domain 17 hs
U133_X3P:HS.17283.1.A1_3P_AT tetratricopeptide repeat domain 17 hs
HG-U133_PLUS_2:224849_AT tetratricopeptide repeat domain 17 hs
HG-U133B:224849_AT tetratricopeptide repeat domain 17 hs
HG-U133_PLUS_2:224852_AT tetratricopeptide repeat domain 17 hs
HG-U133B:224852_AT tetratricopeptide repeat domain 17 hs
HG-U95B:45489_S_AT tetratricopeptide repeat domain 17 hs
HG-U95C:51098_AT tetratricopeptide repeat domain 17 hs
HG-U95B:55718_AT tetratricopeptide repeat domain 17 hs
HG-U95C:64077_AT tetratricopeptide repeat domain 17 hs
HG-U95C:65495_AT tetratricopeptide repeat domain 17 hs
HG-U95D:68165_AT tetratricopeptide repeat domain 17 hs
HG-U95E:71377_AT tetratricopeptide repeat domain 17 hs
HG-U95E:84662_AT tetratricopeptide repeat domain 17 hs
HG-U133_PLUS_2:232646_AT Tetratricopeptide repeat domain 17 hs
HG-U133B:232646_AT Tetratricopeptide repeat domain 17 hs
U133_X3P:HS.270557.0.S1_3P_AT Tetratricopeptide repeat domain 17 hs
HG-U95D:71793_AT Tetratricopeptide repeat domain 17 hs
HG-U95B:43780_R_AT Tetratricopeptide repeat domain 17 hs
HG-U95C:58214_AT Tetratricopeptide repeat domain 17 hs
HG-U95C:60589_R_AT Tetratricopeptide repeat domain 17 hs
HU35KSUBB:RC_T67022_AT Tetratricopeptide repeat domain 17 hs
HU35KSUBC:RC_N66764_AT Tetratricopeptide repeat domain 17 hs
HU35KSUBD:RC_AA487501_AT Tetratricopeptide repeat domain 17 hs
MU11KSUBB:W82341_S_AT tetratricopeptide repeat domain 17 mm
MG-U74AV2:93148_AT tetratricopeptide repeat domain 17 mm
MG-U74BV2:107759_AT tetratricopeptide repeat domain 17 mm
MOE430A:1428862_AT tetratricopeptide repeat domain 17 mm
MOUSE430A_2:1428862_AT tetratricopeptide repeat domain 17 mm
MOUSE430_2:1428862_AT tetratricopeptide repeat domain 17 mm
MG-U74CV2:130799_AT RIKEN cDNA 2810002D19 gene, mRNA (cDNA clone IMAGE:4527333) mm
MU19KSUBB:TC26354_AT RIKEN cDNA 2810002D19 gene, mRNA (cDNA clone IMAGE:4527333) mm
MU19KSUBB:TC26354_G_AT RIKEN cDNA 2810002D19 gene, mRNA (cDNA clone IMAGE:4527333) mm
RG-U34C:RC_AI229046_AT tetratricopeptide repeat domain 17 (predicted) rn
RAE230A:1372854_AT tetratricopeptide repeat domain 17 (predicted) rn
RAT230_2:1372854_AT tetratricopeptide repeat domain 17 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast AAC69037 Hypothetical protein T19A5.1 [Caenorhabditis elegans] ref|NP_505312.1| T19A5.1 [Caenorhabditis elegans] 0.0
blast CAE72054 Hypothetical protein CBG19140 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001440 EMBL-EBI TPR repeat 0.0042
Pfam IPR001440 EMBL-EBI TPR repeat 1.5E-5
Sequence
Target Sequence 
>C. ELEGANS:173020_S_AT
gatgcatcaccacaactagtctatcatcgatgcaacggattctatgatggtttcagtaag
aaaacggcagattatgcgagcatcgtctcaccatttttactcgttttcaacactattact
ccacggaatgatgtcaccaattgggttaatcaagtag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGCATCACCACAACTAGTCTATC 72 413 99 Antisense
GCATCACCACAACTAGTCTATCATC 457 309 102 Antisense
GTCTATCATCGATGCAACGGATTCT 534 469 117 Antisense
GCAACGGATTCTATGATGGTTTCAG 608 319 130 Antisense
GAAAACGGCAGATTATGCGAGCATC 428 353 158 Antisense
GATTATGCGAGCATCGTCTCACCAT 73 431 168 Antisense
TCTCACCATTTTTACTCGTTTTCAA 377 613 184 Antisense
CTCGTTTTCAACACTATTACTCCAC 638 231 198 Antisense
GTTTTCAACACTATTACTCCACGGA 426 447 201 Antisense
TTACTCCACGGAATGATGTCACCAA 216 683 214 Antisense
GTCACCAATTGGGTTAATCAAGTAG 409 343 231 Antisense
Sequence Source Affymetrix Proprietary Database