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[173018_s_at]

Description C52164_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=C52164 /DEF=C.elegans cDNA clone yk239b12 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 95      6grp_high1_10_10 > 58      4grp_highest_8_8 > 23      4grp_high_8_8 > 06      6grp_highest_nonorm > 48      6grp_total > 48      4grp_total > 02      6grp_highest_sub > Cu      6grp_cgc > 18      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25358
1 2 3 4 range
A 3749.5
(-3)
P 		4579.3
(-2.8)
P 		4025.2
(-2.9)
P 		27693.1
(3)
P 		23944
B 4030.5
(-3)
P 		3968.9
(-3)
P 		3915.8
(-3)
P 		25342.5
(3)
P 		21427
C 3512.2
(-3)
P 		3602.9
(-3)
P 		3533.9
(-3)
P 		28869.8
(3)
P 		25358
avr 3764.1
(-3) 		4050.4
(-2.9) 		3825
(-3) 		27301.8
(3) 		23538

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1953
1 2 3 4 5 6 range
A 4094
(1.1)
P 		3357.8
(-1.2)
P 		2783.7
(-3)
P 		3395.1
(-1.1)
P 		3227
(-1.6)
P 		4708.5
(3)
P 		1925
B 3598.4
(-1)
P 		4118.4
(1)
P 		3426.3
(-1.6)
P 		3041.4
(-3)
P 		3240.2
(-2.3)
P 		4672.5
(3)
P 		1631
C 4001.4
(1.8)
P 		4096.2
(2.1)
P 		2755.3
(-3)
P 		2788.9
(-2.9)
P 		3790.8
(1)
P 		4318.7
(3)
P 		1563
avr 3897.9
(0.5) 		3857.5
(0.3) 		2988.4
(-3) 		3075.1
(-2.7) 		3419.3
(-1.4) 		4566.6
(3) 		1578
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4493
1 2 3 4 range
A 1365.2
(-2.3)
P 		994
(-3)
P 		1052.3
(-2.9)
P 		4053.7
(3)
P 		3060
B 1285.3
(-2.5)
P 		980.2
(-2.9)
P 		907.4
(-3)
P 		5400.5
(3)
P 		4493
C 1162.6
(-2.8)
P 		1035.9
(-3)
P 		1231.7
(-2.7)
P 		4867.9
(3)
P 		3832
avr 1271
(-2.6) 		1003.4
(-3) 		1063.8
(-2.9) 		4774
(3) 		3771

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1182
1 2 3 4 5 6 range
A 754.7
(-1.5)
P 		1194.2
(3)
P 		606.2
(-3)
P 		861.1
(-0.4)
P 		973.8
(0.8)
P 		1146.4
(2.5)
P 		588
B 1252.1
(-0.1)
P 		1370.8
(0.6)
P 		832
(-2.8)
P 		805.6
(-3)
P 		1316.4
(0.3)
P 		1742.4
(3)
P 		937
C 1483.1
(3)
P 		1249.9
(1.5)
P 		701.3
(-2.1)
P 		560.8
(-3)
P 		1226.6
(1.3)
P 		1445.7
(2.8)
P 		922
avr 1163.3
(0.7) 		1271.6
(1.6) 		713.2
(-3) 		742.5
(-2.8) 		1172.3
(0.8) 		1444.8
(3) 		732
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173018_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26451
Sequence Type Exemplar sequence
Representative Public ID C52164 NCBI
Target Description C52164_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=C52164 /DEF=C.elegans cDNA clone yk239b12 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058326(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058326 NCBI Caenorhabditis elegans Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-59) (pqn-59) mRNA, complete cds. 11/11 A 
SNAP00000007613 ENSEMBL cdna:SNAP chromosome:CEL140:I:379247:381904:-1 11/11 None
GENEFINDER00000007619 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:379247:381904:-1 11/11 None
R119.4.2 ENSEMBL cdna:known chromosome:CEL140:I:373592:381907:-1 gene:R119.4 11/11 A 
R119.4.1 ENSEMBL cdna:known chromosome:CEL140:I:373592:381905:-1 gene:R119.4 11/11 A 
R119.4.3 ENSEMBL cdna:known chromosome:CEL140:I:378885:381905:-1 gene:R119.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:379235-379504(-) 89.67 89.67
Public Domain and Genome References
Gene Title
Gene Symbol pqn-59
Ensembl R119.4
Entrez Gene 266819 Entrez gene
SwissProt O61708 EMBL-EBI
WormBase CE23925 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAD47125 Prion-like-(q/n-rich)-domain-bearing protein protein 59 [Caenorhabditis elegans] ref|NP_490727.1| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-59) [Caenorhabditis elegans] 0.0
blast D87719 protein R119.4 [imported] - Caenorhabditis elegans 0.0
blast CAE74547 Hypothetical protein CBG22304 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:173018_S_AT
tcgtcgttgttcatgcagcagtactcacntgctccacaccagtttactccattcatgaac
atgatgcccaatgttggaagcagcgctggaggtcgtcaactctacggacaggatgacgag
cgcaagagttacgacaagatgtctggatcgaagccggcagctcagcagaatcaacattct
caataccaacac

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGTCGTTGTTCATGCAGCAGTACT 500 603 53 Antisense
CACACCAGTTTACTCCATTCATGAA 568 195 87 Antisense
CCATTCATGAACATGATGCCCAATG 19 271 101 Antisense
GATGCCCAATGTTGGAAGCAGCGCT 235 415 115 Antisense
TGGAAGCAGCGCTGGAGGTCGTCAA 346 547 127 Antisense
TGGAGGTCGTCAACTCTACGGACAG 96 549 139 Antisense
TCTACGGACAGGATGACGAGCGCAA 702 611 153 Antisense
GACGAGCGCAAGAGTTACGACAAGA 64 379 167 Antisense
AGATGTCTGGATCGAAGCCGGCAGC 9 69 189 Antisense
AGCCGGCAGCTCAGCAGAATCAACA 643 83 204 Antisense
GAATCAACATTCTCAATACCAACAC 518 327 220 Antisense
Sequence Source Affymetrix Proprietary Database