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[173017_at]

Description CEK006F6R_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=D27964 /DEF=C.elegans cDNA clone yk6f6 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 62      6grp_high1_10_10 > 26      4grp_highest_8_8 > 54      4grp_high_8_8 > 09      6grp_highest_nonorm > 20      6grp_total > 37      4grp_total > 23      6grp_highest_sub > Cu      6grp_cgc > 04      6grp_high1_sub > De      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1078
1 2 3 4 range
A 1476.9
(3)
P 		833.1
(-3)
P 		921.3
(-2.2)
P 		1282.9
(1.2)
P 		644
B 1756.6
(3)
P 		919.5
(-1.7)
P 		678.4
(-3)
P 		1719.3
(2.8)
P 		1078
C 1607.3
(3)
P 		983.4
(-2.2)
P 		891.4
(-3)
P 		1457.7
(1.7)
P 		716
avr 1613.6
(3) 		912
(-2.4) 		830.4
(-3) 		1486.6
(2) 		783

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1403
1 2 3 4 5 6 range
A 1484.1
(3)
P 		1258
(1.3)
P 		769.1
(-2.4)
P 		684.9
(-3)
P 		889.4
(-1.5)
P 		922.4
(-1.2)
P 		799
B 2023.6
(3)
P 		1732.9
(1.6)
P 		838.7
(-2.8)
P 		795.8
(-3)
P 		826.6
(-2.8)
P 		1564.9
(0.8)
P 		1228
C 1490.8
(2.9)
P 		1508.2
(3)
P 		781.2
(-1.9)
P 		620.6
(-3)
P 		854.6
(-1.4)
P 		1117.4
(0.4)
P 		888
avr 1666.2
(3) 		1499.7
(2) 		796.3
(-2.4) 		700.4
(-3) 		856.9
(-2) 		1201.6
(0.1) 		966
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 403
1 2 3 4 range
A 537.7
(3)
P 		180.9
(-3)
P 		240.9
(-2)
P 		187.8
(-2.9)
P 		357
B 560.2
(3)
P 		227.1
(-2)
P 		157.2
(-3)
P 		366.4
(0.1)
P 		403
C 532.1
(3)
P 		282.7
(-2.2)
P 		310.7
(-1.6)
P 		245.8
(-3)
P 		286
avr 543.3
(3) 		230.2
(-3) 		236.3
(-2.9) 		266.7
(-2.3) 		313

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 579
1 2 3 4 5 6 range
A 273.6
(-0.7)
P 		447.4
(3)
P 		167.5
(-3)
P 		173.7
(-2.9)
P 		268.4
(-0.8)
P 		224.6
(-1.8)
P 		280
B 704.1
(3)
P 		576.8
(1.5)
P 		203.7
(-3)
P 		210.8
(-2.9)
P 		335.9
(-1.4)
P 		583.6
(1.6)
P 		500
C 552.6
(3)
P 		460.2
(1.7)
P 		198.8
(-2)
P 		124.8
(-3)
P 		276.5
(-0.9)
P 		374.1
(0.5)
P 		428
avr 510.1
(3) 		494.8
(2.7) 		190
(-2.6) 		169.8
(-3) 		293.6
(-0.8) 		394.1
(1) 		340
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173017_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27336
Sequence Type Exemplar sequence
Representative Public ID CEK006F6R NCBI
Target Description CEK006F6R_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=D27964 /DEF=C.elegans cDNA clone yk6f6 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066760, NM_066759
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066759 NCBI Caenorhabditis elegans R10E11.1b (bromodomain) mRNA, complete cds. A 
R10E11.1a ENSEMBL cdna:known chromosome:CEL140:III:9766410:9774718:1 gene:R10E11.1 A 
R10E11.1b ENSEMBL cdna:known chromosome:CEL140:III:9766592:9774466:1 gene:R10E11.1 A 
NM_066760 NCBI Caenorhabditis elegans R10E11.1a (bromodomain) mRNA, complete cds. A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9774414-9774688(+) 91.99 91.99
Public Domain and Genome References
Ensembl R10E11.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA82353 Hypothetical protein R10E11.1a [Caenorhabditis elegans] ref|NP_499161.1| R10E11.1a [Caenorhabditis elegans] 0.0
blast CAD18875 Hypothetical protein R10E11.1b [Caenorhabditis elegans] ref|NP_499160.1| R10E11.1b [Caenorhabditis elegans] sp|P34545|CBP1_CAEEL Protein cbp-1 0.0
blast S60123 hypothetical protein R10E11.1 - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR010303 EMBL-EBI Protein of unknown function DUF902 1.6E-33
Pfam IPR003101 EMBL-EBI Coactivator CBP, KIX 6.4E-55
Pfam IPR000433 EMBL-EBI Zn-finger, ZZ type 1.7E-18
Pfam IPR000197 EMBL-EBI TAZ finger 9.0E-57
Pfam IPR000197 EMBL-EBI TAZ finger 1.5E-41
Pfam IPR009255 EMBL-EBI Protein of unknown function DUF906 1.0E-126
Pfam IPR001487 EMBL-EBI Bromodomain 5.5E-39
Pfam IPR010303 EMBL-EBI Protein of unknown function DUF902 1.6E-33
Pfam IPR003101 EMBL-EBI Coactivator CBP, KIX 6.4E-55
Pfam IPR000433 EMBL-EBI Zn-finger, ZZ type 1.7E-18
Pfam IPR000197 EMBL-EBI TAZ finger 7.0E-36
Pfam IPR000197 EMBL-EBI TAZ finger 7.8E-13
Pfam IPR000197 EMBL-EBI TAZ finger 1.5E-41
Pfam IPR009255 EMBL-EBI Protein of unknown function DUF906 1.0E-126
Pfam IPR001487 EMBL-EBI Bromodomain 5.5E-39
Sequence
Target Sequence 
>C. ELEGANS:173017_AT
gcgcagtgatttgagtagtcgtccgatgtcttgataactccgccgccaatncnatctatg
tncccaagactcagtcgactatttttatcattcaagcgcttaggaatcgctcnaaaagct
cagtaatctggtgtctattcccaaaaaatttatcaccatcaaatttcgtattattatanc
cttgtatccgattttctgatgattcatagccgtcctagatgt

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCGCAGTGATTTGAGTAGTCGTCCG 620 277 48 Antisense
GTGATTTGAGTAGTCGTCCGATGTC 575 483 53 Antisense
TCGTCCGATGTCTTGATAACTCCGC 315 605 66 Antisense
GTCGACTATTTTTATCATTCAAGCG 262 475 121 Antisense
TCATTCAAGCGCTTAGGAATCGCTC 671 617 135 Antisense
AAAAGCTCAGTAATCTGGTGTCTAT 461 131 161 Antisense
GTAATCTGGTGTCTATTCCCAAAAA 136 463 170 Antisense
ATTCCCAAAAAATTTATCACCATCA 421 9 184 Antisense
ATCACCATCAAATTTCGTATTATTA 99 29 199 Antisense
TGTATCCGATTTTCTGATGATTCAT 103 561 230 Antisense
GATGATTCATAGCCGTCCTAGATGT 151 411 245 Antisense
Sequence Source Affymetrix Proprietary Database