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[173016_s_at] zinc finger protein

Description C58866_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=C58866 /DEF=C.elegans cDNA clone yk377g12 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 79      6grp_high1_10_10 > 98      4grp_highest_8_8 > 04      4grp_high_8_8 > 38      6grp_highest_nonorm > 93      6grp_total > 96      4grp_total > 33      6grp_highest_sub > In      6grp_cgc > 68      6grp_high1_sub > In      6grp_cgc_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 166
1 2 3 4 range
A 307.4
(-3)
P 		378.1
(3)
P 		346.1
(0.3)
P 		345.3
(0.2)
P 		71
B 362.4
(-3)
P 		381.6
(-1.9)
P 		447.6
(1.9)
P 		467.8
(3)
P 		105
C 402.5
(-3)
P 		473.7
(3)
P 		425.4
(-1.1)
P 		428.7
(-0.8)
P 		71
avr 357.4
(-3) 		411.1
(2.7) 		406.4
(2.2) 		413.9
(3) 		57

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 526
1 2 3 4 5 6 range
A 351.7
(-1.5)
P 		248.4
(-3)
P 		369.3
(-1.2)
P 		492.5
(0.6)
P 		525.9
(1.1)
P 		652.2
(3)
P 		404
B 304.7
(-3)
P 		327.5
(-2.7)
P 		353.1
(-2.4)
P 		471.9
(-0.9)
P 		660.1
(1.5)
P 		774.5
(3)
P 		470
C 255.6
(-3)
P 		291.8
(-2.5)
P 		321.9
(-2.1)
P 		418.8
(-0.8)
P 		619.5
(2)
P 		691.7
(3)
P 		436
avr 304
(-2.8) 		289.2
(-3) 		348.1
(-2.2) 		461.1
(-0.5) 		601.8
(1.5) 		706.1
(3) 		417
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 98
1 2 3 4 range
A 111.9
(3)
P 		82.1
(0.1)
P 		90.5
(0.9)
P 		50.5
(-3)
P 		61
B 115.6
(3)
P 		94.3
(-3)
P 		103.7
(-0.4)
P 		99.7
(-1.5)
P 		21
C 133.2
(1.8)
P 		136.2
(2)
P 		148.3
(3)
P 		72.3
(-3)
P 		76
avr 120.2
(3) 		104.2
(0.9) 		114.2
(2.2) 		74.2
(-3) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 224
1 2 3 4 5 6 range
A 64.8
(-3)
P 		88.3
(-1.5)
P 		80.4
(-2)
P 		124.9
(0.8)
P 		158.7
(3)
P 		158.8
(3)
P 		94
B 106
(-2.4)
P 		109
(-2.3)
P 		85.8
(-3)
P 		125
(-1.8)
P 		268.2
(2.4)
P 		288.8
(3)
P 		203
C 94.7
(-2.5)
P 		89
(-2.7)
P 		81.9
(-3)
P 		84.2
(-2.9)
P 		200.5
(1.8)
P 		231.5
(3)
P 		150
avr 88.5
(-2.8) 		95.4
(-2.5) 		82.7
(-3) 		111.4
(-1.8) 		209.1
(2.3) 		226.4
(3) 		144
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173016_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26623
Sequence Type Exemplar sequence
Representative Public ID C58866 NCBI
Target Description C58866_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=C58866 /DEF=C.elegans cDNA clone yk377g12 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059448(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059448 NCBI Caenorhabditis elegans yeast RBX (ring finger protein) homolog family member (rbx-2) (rbx-2) mRNA, complete cds. 11/11 A 
SNAP00000031191 ENSEMBL cdna:SNAP chromosome:CEL140:I:6428984:6429984:-1 11/11 None
GENEFINDER00000031194 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6428984:6429984:-1 11/11 None
R10A10.2 ENSEMBL cdna:known chromosome:CEL140:I:6428856:6429984:-1 gene:R10A10.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6428794-6429056(-) 87.33 87.33
Public Domain and Genome References
Gene Title zinc finger protein
Gene Symbol rbx-2
Ensembl R10A10.2
Entrez Gene 172344 Entrez gene
SwissProt P91404 EMBL-EBI
WormBase CE12670 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1587487_AT similar to RING-box protein 2 (Rbx2) (RING finger protein 7) (Sensitive to apoptosis gene protein) cfa
CANINE_2:CFA.15117.1.S1_AT similar to RING-box protein 2 (Rbx2) (RING finger protein 7) (Sensitive to apoptosis gene protein) cfa
CANINE_2:CFA.15117.1.S1_S_AT similar to RING-box protein 2 (Rbx2) (RING finger protein 7) (Sensitive to apoptosis gene protein) cfa
DROSOPHILA_2:1625617_AT dm
CHICKEN:GGA.6330.1.S1_AT ring finger protein 7 gga
CHICKEN:GGA.6330.2.S1_S_AT ring finger protein 7 gga
CHICKEN:GGAAFFX.12637.1.S1_AT ring finger protein 7 gga
CHICKEN:GGA.6330.3.A1_AT Similar to RING-box protein 2 (Rbx2) (RING finger protein 7) (Sensitive to apoptosis gene protein) gga
HG-U133_PLUS_2:224439_X_AT ring finger protein 7 hs
HG-U133B:224439_X_AT ring finger protein 7 hs
HG-U133_PLUS_2:224395_S_AT ring finger protein 7 hs
HG-U133B:224395_S_AT ring finger protein 7 hs
HG-U133_PLUS_2:224394_AT ring finger protein 7 hs
HG-U133B:224394_AT ring finger protein 7 hs
HG-U133_PLUS_2:218286_S_AT ring finger protein 7 hs
HG-U133A:218286_S_AT ring finger protein 7 hs
HG-FOCUS:218286_S_AT ring finger protein 7 hs
HG-U133A_2:218286_S_AT ring finger protein 7 hs
U133_X3P:G13649605_3P_S_AT ring finger protein 7 hs
U133_X3P:G13649605_3P_AT ring finger protein 7 hs
HG-U95C:66138_I_AT ring finger protein 7 hs
HG-U95E:91720_AT ring finger protein 7 hs
HG-U133_PLUS_2:239820_AT Ring finger protein 7 hs
HG-U133B:239820_AT Ring finger protein 7 hs
HG-U95D:78648_AT Ring finger protein 7 hs
U133_X3P:HS.243610.0.A1_3P_AT Ring finger protein 7 hs
Protein Similarities
Method ID Description E-Value
blast AAB37826 Hypothetical protein R10A10.2 [Caenorhabditis elegans] ref|NP_491849.1| yeast RBX (ring finger protein) homolog family member (rbx-2) [Caenorhabditis elegans] 2.0E-66
blast CAE67184 Hypothetical protein CBG12620 [Caenorhabditis briggsae] 5.0E-57
blast XP_795029 PREDICTED: similar to RING-box protein 2 (Rbx2) (RING finger protein 7) (Sensitive to apoptosis gene protein) [Strongylocentrotus purpuratus] 3.0E-37
Protein Domains
Database ID Description E-Value
Pfam IPR001841 EMBL-EBI Zn-finger, RING 2.6E-6
Sequence
Target Sequence 
>C. ELEGANS:173016_S_AT
tctgaaccaagtgctgaatgctacgtagtgtggggagactgtaatcattcattccatcat
tgttgcatgactcagtggattcgacagaacaacagatgcccactgtgtcaaaaggattgg
gtcgtcagccgca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTGAACCAAGTGCTGAATGCTACG 425 607 51 Antisense
CAAGTGCTGAATGCTACGTAGTGTG 300 157 58 Antisense
GAATGCTACGTAGTGTGGGGAGACT 589 329 66 Antisense
GTGGGGAGACTGTAATCATTCATTC 117 489 80 Antisense
TCATTCCATCATTGTTGCATGACTC 494 619 99 Antisense
GTTGCATGACTCAGTGGATTCGACA 185 439 112 Antisense
ATGACTCAGTGGATTCGACAGAACA 493 45 117 Antisense
TTCGACAGAACAACAGATGCCCACT 159 695 130 Antisense
GAACAACAGATGCCCACTGTGTCAA 264 353 137 Antisense
AGATGCCCACTGTGTCAAAAGGATT 484 67 144 Antisense
CAAAAGGATTGGGTCGTCAGCCGCA 242 191 159 Antisense
Sequence Source Affymetrix Proprietary Database