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[173015_s_at]

Description C57115_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=C57115 /DEF=C.elegans cDNA clone yk280a11 : 3prime end, single read.
Cluster 6grp_total > 84      4grp_total > 50      6grp_total_sub > Hat      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 192
1 2 3 4 range
A 154.5
(0.8)
A 		222.7
(3)
A 		120.4
(-0.3)
P 		36.9
(-3)
A 		186
B 88.3
(-3)
A 		214.5
(3)
A 		148.7
(-0.1)
A 		140.7
(-0.5)
M 		126
C 107.7
(-1.4)
A 		144
(-0.1)
A 		229
(3)
A 		65.1
(-3)
A 		164
avr 116.8
(-1.1) 		193.7
(3) 		166
(1.5) 		80.9
(-3) 		113

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 689
1 2 3 4 5 6 range
A 36.7
(-3)
A 		124.7
(-2.1)
A 		231.4
(-1.1)
P 		640
(3)
P 		481.2
(1.4)
P 		468.4
(1.3)
P 		603
B 79.7
(-2.6)
A 		48.1
(-3)
A 		244.2
(-0.7)
P 		558.9
(3)
P 		497.3
(2.3)
P 		487.1
(2.2)
P 		511
C 80.1
(-3)
A 		138
(-2.5)
A 		268.9
(-1.2)
P 		418.6
(0.1)
P 		725.6
(3)
P 		560.8
(1.5)
P 		646
avr 65.5
(-3) 		103.6
(-2.5) 		248.2
(-0.8) 		539.2
(2.7) 		568
(3) 		505.4
(2.3) 		503
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 74
1 2 3 4 range
A 56.2
(3)
A 		48.3
(2.1)
A 		31.5
(0.1)
P 		5.4
(-3)
A 		51
B 28.1
(-3)
A 		53
(3)
A 		34.5
(-1.5)
A 		30
(-2.5)
M 		25
C 35.6
(-0.9)
A 		41.4
(-0.3)
A 		79.8
(3)
A 		11
(-3)
A 		69
avr 40
(1.4) 		47.6
(2.8) 		48.6
(3) 		15.5
(-3) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 228
1 2 3 4 5 6 range
A 6.8
(-3)
A 		44.4
(-1.5)
A 		50.4
(-1.3)
P 		162.3
(3)
P 		145.2
(2.3)
P 		114
(1.1)
P 		156
B 27.7
(-2.6)
A 		16
(-3)
A 		59.3
(-1.6)
P 		148
(1.3)
P 		202
(3)
P 		181.6
(2.3)
P 		186
C 29.7
(-3)
A 		42.1
(-2.6)
A 		68.4
(-1.9)
P 		84.2
(-1.4)
P 		234.8
(3)
P 		187.7
(1.6)
P 		205
avr 21.4
(-3) 		34.2
(-2.6) 		59.4
(-1.7) 		131.5
(0.8) 		194
(3) 		161.1
(1.9) 		173
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173015_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26573
Sequence Type Exemplar sequence
Representative Public ID C57115 NCBI
Target Description C57115_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=C57115 /DEF=C.elegans cDNA clone yk280a11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067856(11), NM_001028331(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067856 NCBI Caenorhabditis elegans Y54G2A.9 (Y54G2A.9) mRNA, complete cds. 11/11 None
NM_001028331 NCBI Caenorhabditis elegans Y54G2A.37 (Y54G2A.37) mRNA, complete cds. 9/11 None
SNAP00000036481 ENSEMBL cdna:SNAP chromosome:CEL140:IV:2820727:2828013:1 11/11 None
GENEFINDER00000036578 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:2821573:2823495:1 9/11 None
GENEFINDER00000036594 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:2825373:2828013:1 11/11 None
Y54G2A.37 ENSEMBL cdna:known chromosome:CEL140:IV:2809471:2823516:1 gene:Y54G2A.37 9/11 None
Y54G2A.9 ENSEMBL cdna:known chromosome:CEL140:IV:2825373:2828013:1 gene:Y54G2A.9 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Y54G2A.39 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:2827685-2828007(+) 88.33 88.33
Public Domain and Genome References
Gene Title

Ensembl Y54G2A.37
Y54G2A.9
Entrez Gene 177062 Entrez gene
259760 Entrez gene
SwissProt Q688Z5 EMBL-EBI
Q95XX5 EMBL-EBI
WormBase CE37293 Wormbase
CE27497 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK68533 Hypothetical protein Y54G2A.9 [Caenorhabditis elegans] ref|NP_500257.1| Y54G2A.9 [Caenorhabditis elegans] 1.0E-172
blast AAK68533 Hypothetical protein Y54G2A.9 [Caenorhabditis elegans] ref|NP_500257.1| Y54G2A.9 [Caenorhabditis elegans] 1.0E-151
blast AAU05552 Hypothetical protein Y54G2A.37 [Caenorhabditis elegans] ref|NP_001023502.1| Y54G2A.37 [Caenorhabditis elegans] 1.0E-122
blast AAU05552 Hypothetical protein Y54G2A.37 [Caenorhabditis elegans] ref|NP_001023502.1| Y54G2A.37 [Caenorhabditis elegans] 2.0E-95
blast AAU87811 Hypothetical protein Y54G2A.39 [Caenorhabditis elegans] ref|NP_001023504.1| Y54G2A.39 [Caenorhabditis elegans] 2.0E-80
blast AAK68533 Hypothetical protein Y54G2A.9 [Caenorhabditis elegans] ref|NP_500257.1| Y54G2A.9 [Caenorhabditis elegans] 4.0E-73
blast AAU05552 Hypothetical protein Y54G2A.37 [Caenorhabditis elegans] ref|NP_001023502.1| Y54G2A.37 [Caenorhabditis elegans] 2.0E-63
Protein Domains
Database ID Description E-Value
Pfam IPR001304 EMBL-EBI C-type lectin 1.1E-7
Pfam IPR001304 EMBL-EBI C-type lectin 1.1E-7
Sequence
Target Sequence 
>C. ELEGANS:173015_S_AT
ccccaccagtcacagatcaaacatgcatgatatttatatcagctgccccagaagccgaat
acggtggtaccacaatcaaatccacctactcctcctttggtacagtagtcggagtactgg
ttggtggagccacttcaattcctgggctctcaattgacacaaatgtgattgctgctccag
cgttgtcggattcggacgccga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCCCACCAGTCACAGATCAAACATG 85 263 80 Antisense
GATATTTATATCAGCTGCCCCAGAA 145 427 108 Antisense
CTGCCCCAGAAGCCGAATACGGTGG 550 235 122 Antisense
TGGTACCACAATCAAATCCACCTAC 661 551 144 Antisense
ACTCCTCCTTTGGTACAGTAGTCGG 610 97 167 Antisense
GAGTACTGGTTGGTGGAGCCACTTC 350 397 191 Antisense
GAGCCACTTCAATTCCTGGGCTCTC 461 383 206 Antisense
ATTCCTGGGCTCTCAATTGACACAA 312 7 217 Antisense
GACACAAATGTGATTGCTGCTCCAG 127 367 235 Antisense
AATGTGATTGCTGCTCCAGCGTTGT 655 163 241 Antisense
CAGCGTTGTCGGATTCGGACGCCGA 700 167 257 Antisense
Sequence Source Affymetrix Proprietary Database