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[173013_at]

Description CEK001B4R_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=D32655 /DEF=C.elegans cDNA clone yk1b4 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 0      6grp_total > 75      4grp_total > 30      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 94
1 2 3 4 range
A 23.3
(-2.7)
A 		66.3
(3)
P 		21.2
(-3)
A 		58.2
(1.9)
A 		45
B 114.7
(3)
A 		36.4
(-2.6)
A 		56.5
(-1.2)
P 		31.3
(-3)
A 		83
C 23.6
(-3)
A 		27
(-2.5)
A 		37.8
(-0.9)
P 		63.9
(3)
A 		40
avr 53.9
(3) 		43.2
(-1.2) 		38.5
(-3) 		51.1
(1.9) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 65
(2.4)
P 		38.6
(-2.6)
A 		47.9
(-0.8)
P 		51.4
(-0.2)
P 		36.3
(-3)
A 		68.1
(3)
P 		32
B 26.1
(-3)
A 		54.8
(0.4)
P 		39.8
(-1.4)
A 		77.4
(3)
P 		41
(-1.3)
P 		55.3
(0.4)
P 		51
C 26.7
(-2.5)
A 		24.4
(-3)
A 		53.2
(3)
P 		43.8
(1)
A 		44.1
(1.1)
A 		43.4
(1)
P 		29
avr 39.3
(-3) 		39.3
(-3) 		47
(-0.5) 		57.5
(3) 		40.5
(-2.6) 		55.6
(2.4) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 8.5
(-1)
A 		14.4
(3)
P 		5.6
(-3)
A 		8.5
(-1)
A 		9
B 36.6
(3)
A 		9
(-2.5)
A 		13.1
(-1.7)
P 		6.7
(-3)
A 		30
C 7.8
(-3)
A 		7.8
(-3)
A 		13.2
(3)
P 		10.8
(0.3)
A 		5
avr 17.6
(3) 		10.4
(-1.9) 		10.6
(-1.7) 		8.7
(-3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 12
(-1.5)
P 		13.7
(0.2)
A 		10.4
(-3)
P 		13
(-0.5)
P 		11
(-2.4)
A 		16.6
(3)
P 		6
B 9.1
(-3)
A 		18.2
(1.7)
P 		9.7
(-2.7)
A 		20.5
(2.9)
P 		16.7
(1)
P 		20.6
(3)
P 		12
C 9.9
(-0.9)
A 		7.4
(-3)
A 		13.5
(2.2)
P 		8.8
(-1.8)
A 		14.3
(2.8)
A 		14.5
(3)
P 		7
avr 10.3
(-3) 		13.1
(-0.6) 		11.2
(-2.2) 		14.1
(0.3) 		14
(0.2) 		17.2
(3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173013_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27311
Sequence Type Exemplar sequence
Representative Public ID CEK001B4R NCBI
Target Description CEK001B4R_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=D32655 /DEF=C.elegans cDNA clone yk1b4 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_170810(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_170810 NCBI Caenorhabditis elegans Y51F10.4 (Y51F10.4) mRNA, complete cds. 9/11 None
Y51F10.4 ENSEMBL cdna:known chromosome:CEL140:I:1932353:1945208:1 gene:Y51F10.4 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000000385 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:1944896-1945208(+) 81.09 98.72
Public Domain and Genome References
Ensembl Y51F10.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_740793 Y51F10.4 [Caenorhabditis elegans] gb|AAL35731.2| Hypothetical protein Y51F10.4 [Caenorhabditis elegans] 0.0
blast CAE74394 Hypothetical protein CBG22126 [Caenorhabditis briggsae] 0.0
blast XP_625176 PREDICTED: similar to GA15814-PA [Apis mellifera] 8.0E-66
Protein Domains
Database ID Description E-Value
Pfam IPR002422 EMBL-EBI Amino acid/polyamine transporter II 9.5E-15
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_740793.2 11 55-74,79-101,133-155,170-187,194-213,228-250,271-293,318-340,361-380,385-407,427-449
Y51F10.4 11 55-74,79-101,133-155,170-187,194-213,228-250,271-293,318-340,361-380,385-407,427-449
Sequence
Target Sequence 
>C. ELEGANS:173013_AT
ggagaagcagcatcagaagcggcccaaatcccagaaaaacttgctccccctgaaaatgtg
gaaaccatggaaaaagagggaaaagcagcagctgagagcgnaaagaaggctgtgaaaaca
gaaacgtgaaaaaaaattttaaattattaattggtttttattgttgggtcgggttgtgat
tttttttttgttgtattttccaccatttcctccgttttgttgccagaaatgctttaagca
ttcaattttctgtagaaaatgtgcgttaga

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGAAGCAGCATCAGAAGCGGCCC 44 519 21 Antisense
AGAAGCAGCATCAGAAGCGGCCCAA 110 73 23 Antisense
AACTTGCTCCCCCTGAAAATGTGGA 292 137 58 Antisense
GAGGGAAAAGCAGCAGCTGAGAGCG 609 401 96 Antisense
TATTGTTGGGTCGGGTTGTGATTTT 701 657 179 Antisense
TTTGTTGTATTTTCCACCATTTCCT 398 667 207 Antisense
TTTCCTCCGTTTTGTTGCCAGAAAT 647 669 226 Antisense
CCTCCGTTTTGTTGCCAGAAATGCT 254 267 229 Antisense
TTTTGTTGCCAGAAATGCTTTAAGC 115 679 235 Antisense
GCTTTAAGCATTCAATTTTCTGTAG 174 305 251 Antisense
TTTTCTGTAGAAAATGTGCGTTAGA 113 677 266 Antisense
Sequence Source Affymetrix Proprietary Database