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[173011_at]

Description C36494_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=C36494 /DEF=C.elegans cDNA clone yk461a12 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 93      6grp_high1_10_10 > 49      4grp_highest_8_8 > 51      4grp_high_8_8 > 24      6grp_highest_nonorm > 83      6grp_total > 39      4grp_total > 47      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 360
1 2 3 4 range
A 605.7
(3)
P 		245.6
(-3)
P 		302
(-2.1)
P 		341.9
(-1.4)
P 		360
B 449.9
(3)
P 		302.8
(-1.4)
P 		248.7
(-3)
P 		312.7
(-1.1)
P 		201
C 526.2
(3)
P 		358.1
(-1.6)
P 		305.9
(-3)
P 		325.7
(-2.5)
P 		220
avr 527.3
(3) 		302.2
(-2.6) 		285.5
(-3) 		326.8
(-2) 		242

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 380
1 2 3 4 5 6 range
A 617
(3)
P 		408.9
(-1.2)
P 		322.9
(-3)
P 		347.7
(-2.5)
P 		436.5
(-0.7)
P 		547.6
(1.6)
P 		294
B 598.6
(3)
P 		442.6
(0.4)
P 		237.2
(-3)
P 		378.8
(-0.6)
P 		528.4
(1.8)
P 		532.9
(1.9)
P 		361
C 417.6
(1.6)
P 		405.2
(1.1)
P 		368.7
(-0.3)
P 		298.6
(-3)
P 		446.8
(2.7)
P 		455.2
(3)
P 		157
avr 544.4
(3) 		418.9
(-0.2) 		309.6
(-3) 		341.7
(-2.2) 		470.6
(1.1) 		511.9
(2.2) 		235
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 170
1 2 3 4 range
A 220.5
(3)
P 		53.3
(-2.9)
P 		79
(-2)
P 		50.1
(-3)
P 		170
B 143.5
(3)
P 		74.8
(-1.8)
P 		57.6
(-3)
P 		66.6
(-2.4)
P 		86
C 174.2
(3)
P 		103
(-0.6)
P 		106.6
(-0.4)
P 		54.9
(-3)
P 		119
avr 179.4
(3) 		77
(-2) 		81.1
(-1.8) 		57.2
(-3) 		122

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 157
1 2 3 4 5 6 range
A 113.7
(0.5)
P 		145.4
(3)
P 		70.3
(-3)
P 		88.2
(-1.6)
P 		131.7
(1.9)
P 		133.3
(2)
P 		75
B 208.3
(2.8)
P 		147.3
(0.4)
P 		57.6
(-3)
P 		100.3
(-1.4)
P 		214.7
(3)
P 		198.7
(2.4)
P 		157
C 154.8
(3)
P 		123.6
(1)
P 		93.8
(-0.9)
P 		60.1
(-3)
P 		144.6
(2.4)
P 		152.4
(2.8)
P 		95
avr 158.9
(2.7) 		138.8
(1.3) 		73.9
(-3) 		82.9
(-2.4) 		163.7
(3) 		161.5
(2.9) 		90
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173011_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26386
Sequence Type Exemplar sequence
Representative Public ID C36494 NCBI
Target Description C36494_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=C36494 /DEF=C.elegans cDNA clone yk461a12 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059675(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059675 NCBI Caenorhabditis elegans F52A8.6a (F52A8.6) mRNA, complete cds. 11/11 None
F52A8.6a ENSEMBL cdna:known chromosome:CEL140:I:7355494:7358472:1 gene:F52A8.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
172487 2 1 NM_059675 173011_at (11), 190143_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7358107-7358364(+) 85.67 85.67
Public Domain and Genome References
Ensembl F52A8.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA96623 Hypothetical protein F52A8.6a [Caenorhabditis elegans] emb|CAA95826.1| Hypothetical protein F52A8.6a [Caenorhabditis elegans] ref|NP_492076.1| F52A8.6a [Caenorhabditis elegans] 0.0
blast CAE66593 Hypothetical protein CBG11917 [Caenorhabditis briggsae] 2.0E-40
blast CAE66594 Hypothetical protein CBG11918 [Caenorhabditis briggsae] 2.0E-24
Sequence
Target Sequence 
>C. ELEGANS:173011_AT
aactgtgatttcacttttctctggccataattatcaagctccttctntgtgccttcatcc
tcccatttcttatttggttttctttgcataatttttcatcacattataggcacccaaaat
ataatttaatcagtattctcggtcagcaaactttttcttatgtacgtctaattatgct

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACTGTGATTTCACTTTTCTCTGGC 518 143 105 Antisense
TTCACTTTTCTCTGGCCATAATTAT 446 685 114 Antisense
TGGCCATAATTATCAAGCTCCTTCT 151 545 126 Antisense
TTCATCCTCCCATTTCTTATTTGGT 262 689 158 Antisense
ATTTCTTATTTGGTTTTCTTTGCAT 216 17 169 Antisense
GGTTTTCTTTGCATAATTTTTCATC 164 505 180 Antisense
TTTTCATCACATTATAGGCACCCAA 45 677 197 Antisense
ATTTAATCAGTATTCTCGGTCAGCA 490 15 228 Antisense
ATTCTCGGTCAGCAAACTTTTTCTT 523 5 239 Antisense
GCAAACTTTTTCTTATGTACGTCTA 645 317 250 Antisense
TTTCTTATGTACGTCTAATTATGCT 245 671 258 Antisense
Sequence Source Affymetrix Proprietary Database