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[173007_s_at]

Description C31512_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=C31512 /DEF=C.elegans cDNA clone yk284b10 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 05      6grp_high1_10_10 > 20      4grp_highest_8_8 > 13      4grp_high_8_8 > 31      6grp_highest_nonorm > 46      6grp_total > 50      4grp_total > 24      6grp_highest_sub > 03_04      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1629
1 2 3 4 range
A 2576.7
(-3)
P 		3108.5
(-1)
P 		3552.9
(0.6)
P 		4186.5
(3)
P 		1610
B 2557.7
(-3)
P 		3189.3
(-0.5)
P 		4065.8
(3)
P 		3985.6
(2.7)
P 		1508
C 2895.4
(-3)
P 		3242
(0.6)
P 		3472.5
(3)
P 		3355.4
(1.8)
P 		577
avr 2676.6
(-3) 		3179.9
(-0.4) 		3697.1
(2.3) 		3842.5
(3) 		1166

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 958
1 2 3 4 5 6 range
A 3172.7
(2.7)
P 		2753.9
(0.1)
P 		3223.3
(3)
P 		3127.3
(2.4)
P 		2265.6
(-3)
P 		2590.6
(-1)
P 		958
B 3052.6
(2.2)
P 		2320.8
(-3)
P 		3164.8
(3)
P 		3087.2
(2.4)
P 		2502.5
(-1.7)
P 		2545.4
(-1.4)
P 		844
C 2940.3
(1.8)
P 		2511.9
(-3)
P 		3045.8
(3)
P 		3041.4
(3)
P 		2596.1
(-2.1)
P 		2783.8
(0.1)
P 		534
avr 3055.2
(2.2) 		2528.9
(-2.4) 		3144.6
(3) 		3085.3
(2.5) 		2454.7
(-3) 		2639.9
(-1.4) 		690
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 645
1 2 3 4 range
A 938.2
(3)
P 		674.8
(-1.9)
P 		928.8
(2.8)
P 		612.8
(-3)
P 		325
B 815.6
(-1.9)
P 		787.7
(-3)
P 		942.1
(3)
P 		849.3
(-0.6)
P 		154
C 958.5
(0.7)
P 		932.1
(0.4)
P 		1210.3
(3)
P 		565.8
(-3)
P 		645
avr 904.1
(0.9) 		798.2
(-0.9) 		1027.1
(3) 		676
(-3) 		351

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 505
1 2 3 4 5 6 range
A 584.9
(-3)
P 		979.4
(3)
P 		702
(-1.2)
P 		793.2
(0.2)
P 		683.7
(-1.5)
P 		630.7
(-2.3)
P 		395
B 1062.2
(3)
P 		772.5
(-2.9)
P 		768.5
(-3)
P 		817.7
(-2)
P 		1016.8
(2.1)
P 		949.2
(0.7)
P 		294
C 1089.8
(3)
P 		766.5
(-1.1)
P 		775.2
(-0.9)
P 		611.6
(-3)
P 		840
(-0.1)
P 		931.9
(1)
P 		478
avr 912.3
(3) 		839.5
(0.5) 		748.6
(-2.7) 		740.8
(-3) 		846.8
(0.7) 		837.3
(0.4) 		172
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173007_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26301
Sequence Type Exemplar sequence
Representative Public ID C31512 NCBI
Target Description C31512_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=C31512 /DEF=C.elegans cDNA clone yk284b10 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058411(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058411 NCBI Caenorhabditis elegans Y34D9A.6 (Y34D9A.6) mRNA, complete cds. 11/11 None
SNAP00000009166 ENSEMBL cdna:SNAP chromosome:CEL140:I:1034475:1050640:1 10/11 None
GENEFINDER00000009193 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:1049605:1050640:1 11/11 None
Y34D9A.6.2 ENSEMBL cdna:known chromosome:CEL140:I:1049596:1050712:1 gene:Y34D9A.6 11/11 None
Y34D9A.6.1 ENSEMBL cdna:known chromosome:CEL140:I:1049598:1050918:1 gene:Y34D9A.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:1049646-1050664(+) 99.67 99.67
Public Domain and Genome References
Gene Title
Ensembl Y34D9A.6
Entrez Gene 171685 Entrez gene
SwissProt Q9N456 EMBL-EBI
WormBase CE25238 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_490811 Y34D9A.7 [Caenorhabditis elegans] gb|AAK29880.3| Hypothetical protein Y34D9A.7 [Caenorhabditis elegans] 1.0E-131
blast NP_001021742 Y34D9A.3 [Caenorhabditis elegans] gb|AAX88819.1| Hypothetical protein Y34D9A.3 [Caenorhabditis elegans] 1.0E-128
blast CAE74322 Hypothetical protein CBG22033 [Caenorhabditis briggsae] 3.0E-65
blast NP_490812 Y34D9A.6 [Caenorhabditis elegans] gb|AAK29881.1| Hypothetical protein Y34D9A.6 [Caenorhabditis elegans] 2.0E-38
blast CAE74325 Hypothetical protein CBG22036 [Caenorhabditis briggsae] 3.0E-35
Protein Domains
Database ID Description E-Value
Pfam IPR002109 EMBL-EBI Glutaredoxin 2.9E-17
Pfam IPR006568 EMBL-EBI PSP, proline-rich 2.1E-27
Pfam IPR002109 EMBL-EBI Glutaredoxin 1.8E-30
Sequence
Target Sequence 
>C. ELEGANS:173007_S_AT
tactgcccgtactgccataaggctcgtgntgntcttgaatcggtcaacgtgaagcccgac
gctctgcaatggatcgaaatcgacgagcgcaaggattgcaatgagattcaggattatctt
ggctctctaaccggagcccgctcggtgccacgtgtcttcatcaacggcaagttcttcggc
ggcggtgacgacacagcggccggagccaagaacggaaaactcgccgcactgctcaaggaa
accgg

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACTGCCCGTACTGCCATAAGGCTC 367 645 34 Antisense
ATCGGTCAACGTGAAGCCCGACGCT 280 35 72 Antisense
CCCGACGCTCTGCAATGGATCGAAA 392 261 88 Antisense
GGATCGAAATCGACGAGCGCAAGGA 208 513 104 Antisense
GATTCAGGATTATCTTGGCTCTCTA 257 431 138 Antisense
TATCTTGGCTCTCTAACCGGAGCCC 9 659 148 Antisense
TGCCACGTGTCTTCATCAACGGCAA 389 587 179 Antisense
TCATCAACGGCAAGTTCTTCGGCGG 13 619 191 Antisense
ACACAGCGGCCGGAGCCAAGAACGG 693 105 224 Antisense
AAGAACGGAAAACTCGCCGCACTGC 705 151 241 Antisense
TCGCCGCACTGCTCAAGGAAACCGG 617 599 254 Antisense
Sequence Source Affymetrix Proprietary Database