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[173005_at]

Description C52995_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=C52995 /DEF=C.elegans cDNA clone yk287b8 : 3prime end, single read.
Cluster 4grp_high_8_8 > 38      6grp_total > 95      4grp_total > 35      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 54.5
(-0.1)
P 		71.2
(3)
A 		43.4
(-2.2)
A 		39.3
(-3)
A 		32
B 28.9
(-3)
A 		93.9
(3)
P 		33.6
(-2.6)
A 		68.6
(0.7)
A 		65
C 65.3
(0.6)
P 		54.2
(-3)
P 		68.6
(1.7)
P 		72.6
(3)
P 		18
avr 49.6
(-2.7) 		73.1
(3) 		48.5
(-3) 		60.2
(-0.1) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 87
1 2 3 4 5 6 range
A 39.9
(-0.9)
A 		12.6
(-3)
M 		40.9
(-0.8)
A 		57
(0.4)
P 		91.2
(3)
P 		84.7
(2.5)
P 		79
B 58.2
(-1.6)
P 		45.5
(-3)
A 		48.5
(-2.7)
A 		72.2
(-0)
P 		66.6
(-0.7)
A 		99.7
(3)
P 		54
C 57.8
(-1.4)
A 		67.5
(-0.1)
M 		45.1
(-3)
A 		91.9
(3)
M 		77.5
(1.2)
A 		91.1
(2.9)
M 		47
avr 52
(-1.8) 		41.9
(-3) 		44.8
(-2.7) 		73.7
(0.8) 		78.4
(1.4) 		91.8
(3) 		50
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 19.8
(3)
P 		15.5
(1.2)
A 		11.4
(-0.6)
A 		5.8
(-3)
A 		14
B 9.2
(-2.5)
A 		23.2
(3)
P 		7.8
(-3)
A 		14.6
(-0.4)
A 		15
C 21.6
(1.8)
P 		15.6
(-1.3)
P 		23.9
(3)
P 		12.2
(-3)
P 		12
avr 16.9
(2) 		18.1
(3) 		14.4
(-0.1) 		10.9
(-3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 7.4
(-2.2)
A 		4.5
(-3)
M 		8.9
(-1.9)
A 		14.4
(-0.4)
P 		27.5
(3)
P 		20.6
(1.2)
P 		23
B 20.2
(-1)
P 		15.2
(-2.2)
A 		11.8
(-3)
A 		19.1
(-1.3)
P 		27.1
(0.6)
A 		37.2
(3)
P 		25
C 21.4
(0.1)
A 		20.6
(-0.1)
M 		11.5
(-3)
A 		18.5
(-0.8)
M 		25.1
(1.3)
A 		30.5
(3)
M 		19
avr 16.3
(-1.2) 		13.4
(-2.1) 		10.7
(-3) 		17.3
(-0.9) 		26.6
(2.1) 		29.4
(3) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173005_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26478
Sequence Type Exemplar sequence
Representative Public ID C52995 NCBI
Target Description C52995_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=C52995 /DEF=C.elegans cDNA clone yk287b8 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059382(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059382 NCBI Caenorhabditis elegans T09B4.1 (T09B4.1) mRNA, complete cds. 9/11 A 
T09B4.1 ENSEMBL cdna:known chromosome:CEL140:I:6193597:6196194:1 gene:T09B4.1 9/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6195848-6196060(+) 89.45 89.45
Public Domain and Genome References
Gene Title
Ensembl T09B4.1
Entrez Gene 172305 Entrez gene
SwissProt O02164 EMBL-EBI
WormBase CE13457 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:264393_AT expressed protein at
ATGENOME1:13952_AT expressed protein at
CANINE:1598460_S_AT similar to phosphatidylinositol glycan class V cfa
CANINE:1598459_AT similar to phosphatidylinositol glycan class V cfa
CANINE:1587670_AT similar to phosphatidylinositol glycan class V cfa
CANINE_2:CFA.10431.1.A1_A_AT similar to phosphatidylinositol glycan class V cfa
CANINE_2:CFAAFFX.19093.1.S1_AT similar to phosphatidylinositol glycan class V cfa
DROSOPHILA_2:1628922_S_AT vegetable dm
DROSGENOME1:153335_AT vegetable dm
CHICKEN:GGAAFFX.199.1.S1_AT similar to RIKEN cDNA D430024F16 gene gga
HU35KSUBA:AA488793_AT phosphatidylinositol glycan, class V hs
HG-U133_PLUS_2:219238_AT phosphatidylinositol glycan, class V hs
HG-U133A:219238_AT phosphatidylinositol glycan, class V hs
HG-U133A_2:219238_AT phosphatidylinositol glycan, class V hs
HU35KSUBA:RC_AA489009_AT phosphatidylinositol glycan, class V hs
U133_X3P:G8923441_3P_S_AT phosphatidylinositol glycan, class V hs
U133_X3P:G8923441_3P_AT phosphatidylinositol glycan, class V hs
HG-U133A_2:51146_AT phosphatidylinositol glycan, class V hs
HG-U133_PLUS_2:51146_AT phosphatidylinositol glycan, class V hs
HG-U133A:51146_AT phosphatidylinositol glycan, class V hs
HG-U95B:51146_AT phosphatidylinositol glycan, class V hs
HG-U133_PLUS_2:240375_AT Phosphatidylinositol glycan, class V hs
HG-U133B:240375_AT Phosphatidylinositol glycan, class V hs
HG-U95D:78038_AT Phosphatidylinositol glycan, class V hs
U133_X3P:HS.131633.0.A1_3P_AT Phosphatidylinositol glycan, class V hs
MG-U74CV2:137557_AT phosphatidylinositol glycan, class V mm
MOE430B:1455075_AT phosphatidylinositol glycan, class V mm
MOUSE430_2:1455075_AT phosphatidylinositol glycan, class V mm
MOE430B:1437663_AT phosphatidylinositol glycan, class V mm
MOUSE430_2:1437663_AT phosphatidylinositol glycan, class V mm
MU19KSUBC:TC41090_AT Phosphatidylinositol glycan, class V, mRNA (cDNA clone MGC:62865 IMAGE:6528864) mm
RAE230B:1391664_AT similar to hypothetical protein FLJ20477 (predicted) rn
RAT230_2:1391664_AT similar to hypothetical protein FLJ20477 (predicted) rn
RAE230B:1395867_AT Similar to hypothetical protein FLJ20477 (predicted) rn
RAT230_2:1395867_AT Similar to hypothetical protein FLJ20477 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast AAB53004 Hypothetical protein T09B4.1 [Caenorhabditis elegans] ref|NP_491783.1| T09B4.1 [Caenorhabditis elegans] 0.0
blast CAE67131 Hypothetical protein CBG12553 [Caenorhabditis briggsae] 0.0
blast CAG00037 unnamed protein product [Tetraodon nigroviridis] 2.0E-20
Protein Domains
Database ID Description E-Value
Pfam IPR007315 EMBL-EBI Protein of unknown function DUF409 4.4E-17
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491783.1 9 136-155,240-262,275-297,302-324,336-358,422-444,524-541,568-590,649-671
T09B4.1 9 136-155,240-262,275-297,302-324,336-358,422-444,524-541,568-590,649-671
Sequence
Target Sequence 
>C. ELEGANS:173005_AT
cgaaaacgaagtaaccgaggctcattctgcatggctgccattcacctaatcataatctaa
tctcttcatgaaattataacacattcatttatttttaacatgtgcctttccccctgttca
tccttcgctgccagtttcaaaattcattaattaatttccttatccgtttaactatatata
tttatccactttatcata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGAAAACGAAGTAACCGAGGCTCAT 405 249 20 Antisense
AAGTAACCGAGGCTCATTCTGCATG 263 157 28 Antisense
TGCCATTCACCTAATCATAATCTAA 4 587 55 Antisense
ACCTAATCATAATCTAATCTCTTCA 419 87 63 Antisense
CATAATCTAATCTCTTCATGAAATT 69 213 70 Antisense
AAATTATAACACATTCATTTATTTT 47 117 90 Antisense
CATTTATTTTTAACATGTGCCTTTC 304 215 105 Antisense
CATCCTTCGCTGCCAGTTTCAAAAT 416 211 138 Antisense
TCGCTGCCAGTTTCAAAATTCATTA 193 601 144 Antisense
TTTCCTTATCCGTTTAACTATATAT 10 671 174 Antisense
ATATATATTTATCCACTTTATCATA 702 19 193 Antisense
Sequence Source Affymetrix Proprietary Database