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[173004_s_at]

Description C31422_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=C31422 /DEF=C.elegans cDNA clone yk282e7 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 43      6grp_total > 10      4grp_total > 49      6grp_cgc > 64      6grp_high1_sub > 02      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3699
1 2 3 4 range
A 11.6
(-3)
A 		2527.4
(1.3)
P 		3554.9
(3)
P 		83
(-2.9)
A 		3543
B 4.7
(-3)
A 		3703.4
(3)
P 		3442.2
(2.6)
P 		52.2
(-2.9)
A 		3699
C 31.8
(-3)
A 		2723
(1.5)
P 		3648.9
(3)
P 		79.1
(-2.9)
A 		3617
avr 16
(-3) 		2984.6
(2) 		3548.7
(3) 		71.4
(-2.9) 		3533

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2852
1 2 3 4 5 6 range
A 86
(-3)
A 		2561
(3)
P 		1833.6
(1.2)
P 		1562.6
(0.6)
P 		1765.5
(1.1)
P 		425.7
(-2.2)
P 		2475
B 58.9
(-3)
P 		2881.3
(3)
P 		1935.6
(1)
P 		1838.9
(0.8)
P 		1523.3
(0.1)
P 		641.8
(-1.8)
P 		2822
C 125.4
(-3)
P 		2911.2
(3)
P 		1684.3
(0.4)
P 		1306.5
(-0.5)
P 		1906.2
(0.8)
P 		436.6
(-2.3)
P 		2786
avr 90.1
(-3) 		2784.5
(3) 		1817.8
(0.8) 		1569.3
(0.3) 		1731.7
(0.7) 		501.4
(-2.1) 		2694
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1270
1 2 3 4 range
A 4.2
(-3)
A 		548.6
(0.5)
P 		929.3
(3)
P 		12.1
(-2.9)
A 		925
B 1.5
(-3)
A 		914.7
(3)
P 		797.6
(2.2)
P 		11.1
(-2.9)
A 		913
C 10.5
(-3)
A 		782.9
(0.7)
P 		1271.7
(3)
P 		13.3
(-3)
A 		1261
avr 5.4
(-3) 		748.7
(1.5) 		999.5
(3) 		12.2
(-3) 		994

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 943
1 2 3 4 5 6 range
A 15.9
(-3)
A 		910.8
(3)
P 		399.3
(-0.4)
P 		396.3
(-0.4)
P 		532.8
(0.5)
P 		103.6
(-2.4)
P 		895
B 20.5
(-3)
P 		959
(3)
P 		470
(-0.1)
P 		487.1
(-0)
P 		618.9
(0.8)
P 		239.3
(-1.6)
P 		939
C 46.5
(-3)
P 		888.3
(3)
P 		428.7
(-0.3)
P 		262.7
(-1.5)
P 		616.8
(1.1)
P 		146.1
(-2.3)
P 		842
avr 27.6
(-3) 		919.4
(3) 		432.7
(-0.3) 		382
(-0.6) 		589.5
(0.8) 		163
(-2.1) 		892
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173004_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26295
Sequence Type Exemplar sequence
Representative Public ID C31422 NCBI
Target Description C31422_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=C31422 /DEF=C.elegans cDNA clone yk282e7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028923(11), NM_001028922(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028923 NCBI Caenorhabditis elegans GRound-Like (grd related) family member (grl-7) (grl-7) mRNA, complete cds. 11/11 None
NM_001028922 NCBI Caenorhabditis elegans GRound-Like (grd related) family member (grl-7) (grl-7) mRNA, complete cds. 11/11 None
SNAP00000026339 ENSEMBL cdna:SNAP chromosome:CEL140:V:11347544:11349599:-1 11/11 None
GENEFINDER00000026344 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:11347544:11349599:-1 11/11 None
T02E9.2.1 ENSEMBL cdna:known chromosome:CEL140:V:11347480:11349602:-1 gene:T02E9.2 11/11 None
T02E9.2.2 ENSEMBL cdna:known chromosome:CEL140:V:11347480:11349600:-1 gene:T02E9.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11347482-11348171(-) 99.0 99.0
Public Domain and Genome References
Ensembl T02E9.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07652 Hypothetical protein T02E9.2a [Caenorhabditis elegans] ref|NP_001024093.1| GRound-Like (grd related) family member (grl-7) [Caenorhabditis elegans] 1.0E-114
blast CAI91177 Hypothetical protein T02E9.2b [Caenorhabditis elegans] ref|NP_001024094.1| GRound-Like (grd related) family member (grl-7) [Caenorhabditis elegans] 1.0E-103
blast CAI91177 Hypothetical protein T02E9.2b [Caenorhabditis elegans] ref|NP_001024094.1| GRound-Like (grd related) family member (grl-7) [Caenorhabditis elegans] 1.0E-100
Protein Domains
Database ID Description E-Value
Pfam IPR007284 EMBL-EBI Protein of unknown function DUF398 2.3E-34
Pfam IPR007284 EMBL-EBI Protein of unknown function DUF398 2.3E-34
Sequence
Target Sequence 
>C. ELEGANS:173004_S_AT
acatcgatgaccaattgaacagctcaaagagaatgatccaattggcagctgaggcccaat
tcggtggacgatttgatgtgatttgcgcaaatggcgattttagctatgtgaccaacaccg
agctctactgccaagagaccaaaggggatatctcatgctacacctac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACATCGATGACCAATTGAACAGCTC 221 107 70 Antisense
TGATCCAATTGGCAGCTGAGGCCCA 234 565 103 Antisense
ATTGGCAGCTGAGGCCCAATTCGGT 139 3 110 Antisense
GAGGCCCAATTCGGTGGACGATTTG 591 403 120 Antisense
GTGGACGATTTGATGTGATTTGCGC 599 487 133 Antisense
TTTGCGCAAATGGCGATTTTAGCTA 216 669 151 Antisense
GGCGATTTTAGCTATGTGACCAACA 488 539 162 Antisense
AGCTATGTGACCAACACCGAGCTCT 456 79 171 Antisense
ACCGAGCTCTACTGCCAAGAGACCA 696 85 186 Antisense
GACCAAAGGGGATATCTCATGCTAC 24 383 206 Antisense
AGGGGATATCTCATGCTACACCTAC 42 59 212 Antisense
Sequence Source Affymetrix Proprietary Database