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[173002_s_at]

Description C38395_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=C38395 /DEF=C.elegans cDNA clone yk492e1 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 42      6grp_high1_10_10 > 24      4grp_highest_8_8 > 24      4grp_high_8_8 > 51      6grp_highest_nonorm > 90      6grp_total > 15      4grp_total > 60      6grp_highest_sub > 02      6grp_high1_sub > 02      6grp_total_sub > Decrease      6grp_rule_based > S2      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 127
1 2 3 4 range
A 179.6
(2.1)
P 		180.8
(2.2)
P 		189.6
(3)
P 		125.6
(-3)
P 		64
B 181.3
(2.1)
P 		192
(3)
P 		160.2
(0.2)
P 		124.3
(-3)
P 		68
C 219.7
(1.9)
P 		228.8
(2.4)
P 		242.4
(3)
P 		115.9
(-3)
P 		127
avr 193.5
(2.5) 		200.5
(3) 		197.4
(2.8) 		121.9
(-3) 		79

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 130
1 2 3 4 5 6 range
A 143.1
(-0.2)
P 		205.5
(3)
P 		112.5
(-1.8)
P 		112.6
(-1.8)
P 		115.9
(-1.6)
P 		89.4
(-3)
P 		116
B 217.4
(3)
P 		213.5
(2.8)
P 		154.1
(-0)
P 		137.1
(-0.8)
P 		111.1
(-2.1)
P 		91.3
(-3)
P 		126
C 203
(3)
P 		187.6
(2.2)
P 		128.8
(-0.9)
P 		87.9
(-3)
P 		100.2
(-2.4)
P 		95.8
(-2.6)
P 		115
avr 187.8
(2.2) 		202.2
(3) 		131.8
(-0.8) 		112.5
(-1.9) 		109.1
(-2.1) 		92.2
(-3) 		110
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 66
1 2 3 4 range
A 65.4
(3)
P 		39.2
(-0.3)
P 		49.6
(1)
P 		18.4
(-3)
P 		47
B 57.8
(3)
P 		47.4
(1)
P 		37.1
(-1)
P 		26.5
(-3)
P 		31
C 72.7
(1.9)
P 		65.8
(1.3)
P 		84.5
(3)
P 		19.6
(-3)
P 		65
avr 65.3
(3) 		50.8
(1) 		57.1
(1.9) 		21.5
(-3) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 26.4
(-2.5)
P 		73.1
(3)
P 		24.5
(-2.7)
P 		28.6
(-2.2)
P 		35
(-1.5)
P 		21.8
(-3)
P 		51
B 75.6
(3)
P 		71.1
(2.4)
P 		37.4
(-2.5)
P 		36.3
(-2.7)
P 		45.2
(-1.4)
P 		34
(-3)
P 		42
C 75.3
(3)
P 		57.3
(1.1)
P 		32.8
(-1.4)
P 		17.7
(-3)
P 		32.4
(-1.5)
P 		32.1
(-1.5)
P 		58
avr 59.1
(1.8) 		67.2
(3) 		31.6
(-2.4) 		27.5
(-3) 		37.5
(-1.5) 		29.3
(-2.7) 		40
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173002_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26416
Sequence Type Exemplar sequence
Representative Public ID C38395 NCBI
Target Description C38395_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=C38395 /DEF=C.elegans cDNA clone yk492e1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076063(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076063 NCBI Caenorhabditis elegans F52H2.7 (F52H2.7) mRNA, complete cds. 11/11 A 
SNAP00000036210 ENSEMBL cdna:SNAP chromosome:CEL140:X:2566667:2572647:-1 11/11 None
GENEFINDER00000036213 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:2566667:2572636:-1 11/11 None
F52H2.7 ENSEMBL cdna:known chromosome:CEL140:X:2566551:2572647:-1 gene:F52H2.7 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:2566610-2566889(-) 92.33 92.33
Public Domain and Genome References
Gene Title
Ensembl F52H2.7
Entrez Gene 180558 Entrez gene
SwissProt O17398 EMBL-EBI
WormBase CE31179 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB71316 Hypothetical protein F52H2.7 [Caenorhabditis elegans] ref|NP_508464.2| F52H2.7 [Caenorhabditis elegans] 0.0
blast CAE58858 Hypothetical protein CBG02083 [Caenorhabditis briggsae] 0.0
blast XP_866129 PREDICTED: similar to CG6454-PB, isoform B isoform 6 [Canis familiaris] 4.0E-45
Protein Domains
Database ID Description E-Value
Pfam IPR000008 EMBL-EBI C2 domain 9.8E-23
Pfam IPR000008 EMBL-EBI C2 domain 6.6E-16
Sequence
Target Sequence 
>C. ELEGANS:173002_S_AT
taccacagtggacggttttgtgaccagcgcgcttgaggaaagaataacaacaatcaagtc
aatattatctctcggaggatngaatnccgtngtcgctaacatgcgaatctcatgcccaca
gtttaatgtgtctaaagaacatgctcatatcattnttttagttagtgttgacttttatac
cgttcct

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACCACAGTGGACGGTTTTGTGACC 513 649 66 Antisense
CAGTGGACGGTTTTGTGACCAGCGC 683 205 71 Antisense
TTTTGTGACCAGCGCGCTTGAGGAA 117 679 81 Antisense
GACCAGCGCGCTTGAGGAAAGAATA 639 383 87 Antisense
CAATCAAGTCAATATTATCTCTCGG 563 179 116 Antisense
AAGTCAATATTATCTCTCGGAGGAT 146 155 121 Antisense
GTCGCTAACATGCGAATCTCATGCC 207 475 157 Antisense
TAACATGCGAATCTCATGCCCACAG 180 639 162 Antisense
TCATGCCCACAGTTTAATGTGTCTA 706 621 175 Antisense
GTGTCTAAAGAACATGCTCATATCA 694 485 193 Antisense
TAGTGTTGACTTTTATACCGTTCCT 179 653 228 Antisense
Sequence Source Affymetrix Proprietary Database