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[172999_s_at]

Description C38352_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=C38352 /DEF=C.elegans cDNA clone yk491h1 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 37      6grp_high1_10_10 > 63      4grp_highest_8_8 > 25      4grp_high_8_8 > 59      6grp_highest_nonorm > 46      6grp_total > 63      4grp_total > 60      6grp_highest_sub > 03_04      6grp_high1_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1592
1 2 3 4 range
A 2220.4
(2.5)
P 		1923.6
(1.4)
P 		2354.5
(3)
P 		763.2
(-3)
P 		1591
B 2014.7
(2.2)
P 		2197.6
(3)
P 		2075
(2.5)
P 		819.2
(-3)
P 		1378
C 2054.8
(2.6)
P 		1620.3
(0.7)
P 		2153.5
(3)
P 		762.9
(-3)
P 		1391
avr 2096.6
(2.6) 		1913.8
(1.8) 		2194.3
(3) 		781.8
(-3) 		1413

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1642
1 2 3 4 5 6 range
A 2282.4
(-2.9)
P 		2270.4
(-3)
P 		3286.4
(3)
P 		3061.4
(1.7)
P 		2497.3
(-1.7)
P 		2631.7
(-0.9)
P 		1016
B 2137.2
(-3)
P 		2818.3
(-0.5)
P 		3779.1
(3)
P 		3437
(1.7)
P 		2967.3
(0)
P 		2530.5
(-1.6)
P 		1642
C 2258
(-3)
P 		2847.3
(0.1)
P 		3413
(3)
P 		3148.9
(1.6)
P 		2622
(-1.1)
P 		3192.5
(1.9)
P 		1155
avr 2225.9
(-3) 		2645.3
(-1) 		3492.8
(3) 		3215.8
(1.7) 		2695.5
(-0.8) 		2784.9
(-0.4) 		1267
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 697
1 2 3 4 range
A 808.4
(3)
P 		417.6
(-0.4)
P 		615.5
(1.3)
P 		111.7
(-3)
P 		697
B 642.5
(3)
P 		542.8
(1.7)
P 		480.8
(0.9)
P 		174.6
(-3)
P 		468
C 680.2
(2.3)
P 		465.8
(0.3)
P 		750.6
(3)
P 		128.6
(-3)
P 		622
avr 710.4
(3) 		475.4
(0.5) 		615.6
(2) 		138.3
(-3) 		572

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 785
1 2 3 4 5 6 range
A 420.7
(-3)
P 		807.5
(3)
P 		715.7
(1.6)
P 		776.4
(2.5)
P 		753.6
(2.2)
P 		640.7
(0.4)
P 		387
B 743.6
(-3)
P 		938.1
(-0.5)
P 		917.7
(-0.7)
P 		910.3
(-0.8)
P 		1205.6
(3)
P 		943.6
(-0.4)
P 		462
C 837
(-0.2)
P 		868.8
(0.2)
P 		868.7
(0.2)
P 		633.2
(-3)
P 		848.4
(-0)
P 		1068.7
(3)
P 		436
avr 667.1
(-3) 		871.5
(1.6) 		834
(0.7) 		773.3
(-0.6) 		935.9
(3) 		884.3
(1.8) 		269
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172999_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26415
Sequence Type Exemplar sequence
Representative Public ID C38352 NCBI
Target Description C38352_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=C38352 /DEF=C.elegans cDNA clone yk491h1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060127(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060127 NCBI Caenorhabditis elegans C41G7.3 (C41G7.3) mRNA, complete cds. 11/11 A 
SNAP00000008715 ENSEMBL cdna:SNAP chromosome:CEL140:I:9523256:9523918:-1 11/11 None
GENEFINDER00000008727 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:9523256:9526820:-1 11/11 None
C41G7.3 ENSEMBL cdna:known chromosome:CEL140:I:9523125:9526820:-1 gene:C41G7.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9523121-9523446(-) 90.67 90.67
Public Domain and Genome References
Gene Title
Ensembl C41G7.3
Entrez Gene 172786 Entrez gene
SwissProt Q93367 EMBL-EBI
WormBase CE08667 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB02840 Hypothetical protein C41G7.3 [Caenorhabditis elegans] ref|NP_492528.1| C41G7.3 [Caenorhabditis elegans] 0.0
blast CAE56705 Hypothetical protein CBG24491 [Caenorhabditis briggsae] 1.0E-130
blast CAE56705 Hypothetical protein CBG24491 [Caenorhabditis briggsae] 1.0E-118
blast CAE56706 Hypothetical protein CBG24492 [Caenorhabditis briggsae] 5.0E-84
blast CAB02840 Hypothetical protein C41G7.3 [Caenorhabditis elegans] ref|NP_492528.1| C41G7.3 [Caenorhabditis elegans] 8.0E-80
Protein Domains
Database ID Description E-Value
Pfam IPR004307 EMBL-EBI TspO/MBR-related protein 1.6E-64
Pfam IPR004307 EMBL-EBI TspO/MBR-related protein 1.6E-64
Pfam IPR004307 EMBL-EBI TspO/MBR-related protein 1.6E-64
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_492528.1 4 435-457,470-489,494-516,523-542
C41G7.3 4 435-457,470-489,494-516,523-542
SNAP00000008715 5 12-31,53-75,88-107,112-134,141-160
GENEFINDER00000008727 4 454-476,489-508,513-535,542-561
Sequence
Target Sequence 
>C. ELEGANS:172999_S_AT
ataccactgttgtcagtttgactgctgcagctgcatcttttgcattctacaagattgaca
agaaggctggcctccttgtcgttccattcgctgtatggaccgctttctacgcttacctcg
cttactccatcaagaaggagaatgacccaatcaagaacttgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATACCACTGTTGTCAGTTTGACTGC 90 23 84 Antisense
TTGTCAGTTTGACTGCTGCAGCTGC 696 705 93 Antisense
ACTGCTGCAGCTGCATCTTTTGCAT 316 99 104 Antisense
GCAGCTGCATCTTTTGCATTCTACA 682 311 110 Antisense
CTTTTGCATTCTACAAGATTGACAA 91 221 120 Antisense
AAGATTGACAAGAAGGCTGGCCTCC 658 155 134 Antisense
GACAAGAAGGCTGGCCTCCTTGTCG 42 365 140 Antisense
CTTGTCGTTCCATTCGCTGTATGGA 3 219 158 Antisense
TCCATTCGCTGTATGGACCGCTTTC 419 591 166 Antisense
TACCTCGCTTACTCCATCAAGAAGG 296 649 197 Antisense
GAGAATGACCCAATCAAGAACTTGT 297 389 221 Antisense
Sequence Source Affymetrix Proprietary Database