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[172998_s_at]

Description C56943_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=C56943 /DEF=C.elegans cDNA clone yk308a1 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 99      6grp_total > 99      4grp_total > 02      6grp_total_sub > Increase      6grp_rule_based > S5      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 138
1 2 3 4 range
A 40.4
(-1.7)
A 		11.2
(-3)
A 		27.3
(-2.3)
A 		142.9
(3)
P 		132
B 22.7
(-3)
A 		28.5
(-2)
A 		32.2
(-1.3)
A 		57.1
(3)
P 		34
C 32.4
(-2.7)
P 		46.1
(-2)
A 		25.6
(-3)
P 		149
(3)
P 		123
avr 31.8
(-2.8) 		28.6
(-3) 		28.4
(-3) 		116.3
(3) 		88

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1260
1 2 3 4 5 6 range
A 49.2
(-2.8)
A 		18.5
(-3)
A 		49.2
(-2.8)
P 		47.3
(-2.8)
A 		926.2
(3)
P 		478.5
(0)
P 		908
B 54.7
(-2.9)
P 		46.1
(-3)
A 		42.7
(-3)
A 		51.3
(-2.9)
P 		996.6
(3)
P 		628.7
(0.7)
P 		954
C 34.4
(-2.9)
A 		67.6
(-2.8)
P 		26.7
(-3)
A 		23.7
(-3)
A 		1278.4
(3)
P 		571.6
(-0.4)
P 		1255
avr 46.1
(-3) 		44.1
(-3) 		39.5
(-3) 		40.8
(-3) 		1067.1
(3) 		559.6
(0) 		1028
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 14.7
(1)
A 		2.4
(-3)
A 		7.1
(-1.5)
A 		20.9
(3)
P 		19
B 7.2
(-2.8)
A 		7
(-3)
A 		7.5
(-2.4)
A 		12.2
(3)
P 		5
C 10.7
(-2.3)
P 		13.2
(-1.4)
A 		8.9
(-3)
P 		25.1
(3)
P 		16
avr 10.9
(-1.3) 		7.5
(-3) 		7.8
(-2.8) 		19.4
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 409
1 2 3 4 5 6 range
A 9.1
(-2.9)
A 		6.6
(-3)
A 		10.7
(-2.9)
P 		12
(-2.9)
A 		279.5
(3)
P 		116.5
(-0.6)
P 		273
B 19
(-2.9)
P 		15.3
(-2.9)
A 		10.4
(-3)
A 		13.6
(-3)
P 		404.9
(3)
P 		234.4
(0.4)
P 		395
C 12.8
(-2.9)
A 		20.6
(-2.8)
P 		6.8
(-3)
A 		4.8
(-3)
A 		413.7
(3)
P 		191.4
(-0.3)
P 		409
avr 13.6
(-2.9) 		14.2
(-2.9) 		9.3
(-3) 		10.1
(-3) 		366
(3) 		180.8
(-0.1) 		357
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172998_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26570
Sequence Type Exemplar sequence
Representative Public ID C56943 NCBI
Target Description C56943_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=C56943 /DEF=C.elegans cDNA clone yk308a1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060145(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060145 NCBI Caenorhabditis elegans K07A1.6 (K07A1.6) mRNA, complete cds. 11/11 A 
GENEFINDER00000041870 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:9600181:9601114:-1 11/11 None
SNAP00000041848 ENSEMBL cdna:SNAP chromosome:CEL140:I:9600194:9601195:-1 11/11 None
K07A1.6 ENSEMBL cdna:known chromosome:CEL140:I:9600130:9601225:-1 gene:K07A1.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9600101-9600455(-) 77.0 77.0
Public Domain and Genome References
Gene Title
Ensembl K07A1.6
Entrez Gene 172797 Entrez gene
SwissProt P90911 EMBL-EBI
WormBase CE18856 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03176 Hypothetical protein K07A1.6 [Caenorhabditis elegans] ref|NP_492546.1| K07A1.6 [Caenorhabditis elegans] 4.0E-51
blast CAE60167 Hypothetical protein CBG03721 [Caenorhabditis briggsae] 3.0E-27
blast CAB03176 Hypothetical protein K07A1.6 [Caenorhabditis elegans] ref|NP_492546.1| K07A1.6 [Caenorhabditis elegans] 1.0E-25
blast CAE60167 Hypothetical protein CBG03721 [Caenorhabditis briggsae] 2.0E-12
Protein Domains
Database ID Description E-Value
Pfam IPR002919 EMBL-EBI Trypsin inhibitor-like, cysteine-rich TIL region 1.9E-21
Sequence
Target Sequence 
>C. ELEGANS:172998_S_AT
gaaaagagttgtactcatcctagacaaccaccattttcccaatgcaaanttccatgcatt
ccatattcatgtcgctgtaatcccggattttatcgtgataatcagggaactggacgatgt
gttcgcttacgtagatgcaaga

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAAAGAGTTGTACTCATCCTAGAC 208 355 140 Antisense
TTGTACTCATCCTAGACAACCACCA 413 703 148 Antisense
TTCCATGCATTCCATATTCATGTCG 224 701 189 Antisense
TGCATTCCATATTCATGTCGCTGTA 467 579 194 Antisense
CCATATTCATGTCGCTGTAATCCCG 491 269 200 Antisense
TTCATGTCGCTGTAATCCCGGATTT 220 689 205 Antisense
GTAATCCCGGATTTTATCGTGATAA 121 463 216 Antisense
ATCGTGATAATCAGGGAACTGGACG 213 35 231 Antisense
AACTGGACGATGTGTTCGCTTACGT 508 141 247 Antisense
CGATGTGTTCGCTTACGTAGATGCA 240 249 254 Antisense
TGTGTTCGCTTACGTAGATGCAAGA 660 555 257 Antisense
Sequence Source Affymetrix Proprietary Database