[Home] | [Total List]

[172995_at] G-protein coupled receptor

Description C35133_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=C35133 /DEF=C.elegans cDNA clone yk424c2 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 19      4grp_high_8_8 > 20      6grp_total > 29      4grp_total > 13      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 58.6
(0.1)
P 		57.8
(-0.1)
P 		43.9
(-3)
P 		72.6
(3)
P 		29
B 57.8
(0.4)
P 		26
(-3)
A 		29.4
(-2.6)
P 		81.7
(3)
P 		56
C 67.4
(0.5)
P 		62.6
(-0)
P 		37.7
(-3)
P 		88
(3)
P 		50
avr 61.3
(0.3) 		48.8
(-1.4) 		37
(-3) 		80.8
(3) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 62.6
(2.4)
P 		43.2
(-3)
A 		64.8
(3)
P 		46.8
(-2)
P 		60.6
(1.8)
P 		54.5
(0.1)
P 		22
B 53
(-0.4)
P 		46
(-1.7)
P 		53.7
(-0.3)
P 		38.9
(-3)
M 		71.9
(3)
P 		46.8
(-1.6)
P 		33
C 75.6
(3)
P 		63.1
(1.1)
P 		35.3
(-3)
M 		46.4
(-1.3)
M 		65.6
(1.5)
P 		50.1
(-0.8)
P 		40
avr 63.7
(2.4) 		50.8
(-1.1) 		51.3
(-1) 		44
(-3) 		66
(3) 		50.5
(-1.2) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 21.3
(3)
P 		12.5
(-1.9)
P 		11.5
(-2.5)
P 		10.6
(-3)
P 		11
B 18.4
(3)
P 		6.4
(-3)
A 		6.8
(-2.8)
P 		17.4
(2.5)
P 		12
C 22.3
(3)
P 		18
(0.2)
P 		13.1
(-3)
P 		14.8
(-1.9)
P 		9
avr 20.7
(3) 		12.3
(-1.9) 		10.5
(-3) 		14.3
(-0.8) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 11.5
(-3)
P 		15.4
(0.4)
A 		14.1
(-0.7)
P 		11.9
(-2.6)
P 		18.3
(3)
P 		13.3
(-1.4)
P 		7
B 18.4
(-0.4)
P 		15.3
(-1.4)
P 		13
(-2.1)
P 		10.3
(-3)
M 		29.2
(3)
P 		17.4
(-0.7)
P 		19
C 28
(3)
P 		19.3
(0.3)
P 		9
(-3)
M 		9.3
(-2.9)
M 		21.2
(0.9)
P 		16.8
(-0.5)
P 		19
avr 19.3
(1.3) 		16.7
(0) 		12
(-2.3) 		10.5
(-3) 		22.9
(3) 		15.8
(-0.4) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 172995_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26354
Sequence Type Exemplar sequence
Representative Public ID C35133 NCBI
Target Description C35133_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=C35133 /DEF=C.elegans cDNA clone yk424c2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066342(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066342 NCBI Caenorhabditis elegans C06G4.5 (C06G4.5) mRNA, complete cds. 11/11 A 
C06G4.5 ENSEMBL cdna:known chromosome:CEL140:III:7990713:7996362:-1 gene:C06G4.5 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000040335 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7990710-7991592(-) 91.0 99.67
Public Domain and Genome References
Gene Title G-protein coupled receptor
Ensembl C06G4.5
Entrez Gene 176124 Entrez gene
WormBase CE38997 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_498743 C06G4.5 [Caenorhabditis elegans] sp|P34311|YKR5_CAEEL Probable G-protein coupled receptor C06G4.5 0.0
blast AAA27938 Hypothetical protein C06G4.5 [Caenorhabditis elegans] 0.0
blast CAE75040 Hypothetical protein CBG22950 [Caenorhabditis briggsae] 1.0E-180
Protein Domains
Database ID Description E-Value
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 6.3E-11
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_498743.1 5 52-74,94-116,202-224,244-266,288-310
C06G4.5 5 52-74,94-116,202-224,244-266,288-310
Sequence
Target Sequence 
>C. ELEGANS:172995_AT
aggtaaatggctcaatgaactcaatagccactgcagctccaacaaaaacgattggaaata
atgaagtacttgttgccacgtcaacaattgatgatgatgttgcaactgatgttgtagatg
ttcgacttttgagtaatcataatccaacttttctttgaaattttaaataataatttaaat
taacgggtatttatcacacattt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGGTAAATGGCTCAATGAACTCAAT 598 45 55 Antisense
TGAACTCAATAGCCACTGCAGCTCC 690 573 70 Antisense
TGCAGCTCCAACAAAAACGATTGGA 181 579 86 Antisense
AATGAAGTACTTGTTGCCACGTCAA 505 163 114 Antisense
TTGCCACGTCAACAATTGATGATGA 575 701 127 Antisense
GATGATGATGTTGCAACTGATGTTG 71 411 144 Antisense
ACTGATGTTGTAGATGTTCGACTTT 273 95 159 Antisense
GATGTTCGACTTTTGAGTAATCATA 701 407 171 Antisense
GAGTAATCATAATCCAACTTTTCTT 484 399 185 Antisense
CATAATCCAACTTTTCTTTGAAATT 625 213 192 Antisense
ATTAACGGGTATTTATCACACATTT 334 13 233 Antisense
Sequence Source Affymetrix Proprietary Database