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[172994_at] glutamate dehydrogenase

Description C58659_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=C58659 /DEF=C.elegans cDNA clone yk369h1 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 03      6grp_high1_10_10 > 22      4grp_highest_8_8 > 29      4grp_high_8_8 > 07      6grp_highest_nonorm > 05      6grp_total > 32      4grp_total > 06      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3796
1 2 3 4 range
A 8737
(3)
P 		6086
(-3)
P 		8047.4
(1.4)
P 		8755.9
(3)
P 		2670
B 8055.4
(-0.2)
P 		6857.2
(-3)
P 		7390.9
(-1.8)
P 		9464.3
(3)
P 		2607
C 6739.9
(-3)
P 		7053.9
(-2.4)
P 		7513.1
(-1.5)
P 		9881.5
(3)
P 		3142
avr 7844.1
(-0.4) 		6665.7
(-3) 		7650.5
(-0.8) 		9367.2
(3) 		2702

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3316
1 2 3 4 5 6 range
A 5858.7
(0.8)
P 		6447
(1.9)
P 		7008.6
(3)
P 		5113
(-0.6)
P 		5433.2
(-0)
P 		3885.5
(-3)
P 		3123
B 7201.9
(3)
P 		6708.6
(2)
P 		7065.1
(2.7)
P 		5721.6
(0)
P 		4839.7
(-1.8)
P 		4234.1
(-3)
P 		2968
C 6862.5
(3)
P 		6503.7
(2.2)
P 		6363.2
(1.9)
P 		6200.4
(1.6)
P 		5040.5
(-0.9)
P 		4088.2
(-3)
P 		2774
avr 6641
(2.6) 		6553.1
(2.4) 		6812.3
(3) 		5678.3
(0.5) 		5104.5
(-0.7) 		4069.3
(-3) 		2743
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1899
1 2 3 4 range
A 3181.1
(3)
P 		1321.1
(-2.9)
P 		2103.7
(-0.4)
P 		1281.7
(-3)
P 		1899
B 2568.8
(3)
P 		1693.6
(-3)
P 		1712.7
(-2.9)
P 		2016.8
(-0.8)
P 		875
C 2231.1
(0.6)
P 		2028.1
(-0.7)
P 		2618.6
(3)
P 		1666.2
(-3)
P 		952
avr 2660.3
(3) 		1680.9
(-2.8) 		2145
(-0.1) 		1654.9
(-3) 		1005

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1598
1 2 3 4 5 6 range
A 1080
(-2.4)
P 		2292.9
(3)
P 		1526.3
(-0.4)
P 		1296.8
(-1.4)
P 		1639.5
(0.1)
P 		946
(-3)
P 		1347
B 2505.9
(3)
P 		2233
(1.3)
P 		1715.6
(-1.8)
P 		1515.5
(-3)
P 		1966.3
(-0.3)
P 		1578.9
(-2.6)
P 		990
C 2543.6
(3)
P 		1984.5
(0.4)
P 		1619.6
(-1.3)
P 		1246.9
(-3)
P 		1631
(-1.2)
P 		1368.6
(-2.4)
P 		1297
avr 2043.2
(2.1) 		2170.1
(3) 		1620.5
(-0.8) 		1353.1
(-2.6) 		1745.6
(0.1) 		1297.8
(-3) 		872
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 172994_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26614
Sequence Type Exemplar sequence
Representative Public ID C58659 NCBI
Target Description C58659_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=C58659 /DEF=C.elegans cDNA clone yk369h1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069866(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069866 NCBI Caenorhabditis elegans ZK829.4 (ZK829.4) mRNA, complete cds. 11/11 None
ZK829.4.5 ENSEMBL cdna:known chromosome:CEL140:IV:11953213:11955514:1 gene:ZK829.4 11/11 None
ZK829.4.2 ENSEMBL cdna:known chromosome:CEL140:IV:11953213:11955514:1 gene:ZK829.4 11/11 None
ZK829.4.1 ENSEMBL cdna:known chromosome:CEL140:IV:11953217:11955514:1 gene:ZK829.4 11/11 A 
ZK829.4.4 ENSEMBL cdna:known chromosome:CEL140:IV:11953219:11955957:1 gene:ZK829.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11955171-11955444(+) 91.0 91.0
Public Domain and Genome References
Gene Title glutamate dehydrogenase
Ensembl ZK829.4
Entrez Gene 178130 Entrez gene
SwissProt Q23621 EMBL-EBI
WormBase CE06652 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:15594_S_AT glutamate dehydrogenase 2 (GDH2) at
ATH1-121501:250580_AT glutamate dehydrogenase 2 (GDH2) at
DROSOPHILA_2:1640835_A_AT Glutamate dehydrogenase dm
DROSGENOME1:154218_AT Glutamate dehydrogenase dm
CHICKEN:GGA.16450.1.S1_AT glutamate dehydrogenase 1 gga
HG-U133_PLUS_2:200947_S_AT glutamate dehydrogenase 1 hs
HG-FOCUS:200947_S_AT glutamate dehydrogenase 1 hs
HG-U133A_2:200947_S_AT glutamate dehydrogenase 1 hs
HG-U133A:200947_S_AT glutamate dehydrogenase 1 hs
HG-U133_PLUS_2:200946_X_AT glutamate dehydrogenase 1 hs
HG-U133A_2:200946_X_AT glutamate dehydrogenase 1 hs
HG-U133A:200946_X_AT glutamate dehydrogenase 1 hs
HU35KSUBC:RC_N57779_AT glutamate dehydrogenase 1 hs
HU35KSUBC:RC_AA122345_F_AT glutamate dehydrogenase 1 hs
HU35KSUBD:RC_T86978_S_AT glutamate dehydrogenase 1 hs
HUGENEFL:X67491_F_AT glutamate dehydrogenase 1 hs
HUGENEFL:M20867_S_AT glutamate dehydrogenase 1 hs
U133_X3P:G4885280_3P_A_AT glutamate dehydrogenase 1 hs
U133_X3P:HS.77508.0.A1_3P_X_AT glutamate dehydrogenase 1 hs
U133_X3P:HS.77508.0.A1_3P_A_AT glutamate dehydrogenase 1 hs
U133_X3P:HS.327047.0.A1_3P_AT glutamate dehydrogenase 1 hs
U133_X3P:HS.272497.1.S1_3P_S_AT glutamate dehydrogenase 1 hs
HG-U133_PLUS_2:244802_AT glutamate dehydrogenase 1 hs
HG-U133B:244802_AT glutamate dehydrogenase 1 hs
HG-U95AV2:31691_G_AT glutamate dehydrogenase 1 hs
HG-U95AV2:37341_AT glutamate dehydrogenase 1 hs
HG-U95B:54199_AT glutamate dehydrogenase 1 hs
HG-U95D:79672_AT glutamate dehydrogenase 1 hs
HG-U95D:87180_AT glutamate dehydrogenase 1 hs
HG-U133_PLUS_2:232741_AT Glutamate dehydrogenase 1 hs
HG-U133B:232741_AT Glutamate dehydrogenase 1 hs
HU35KSUBC:RC_N63375_AT Glutamate dehydrogenase 1 hs
U133_X3P:HS.31330.0.S1_3P_X_AT Glutamate dehydrogenase 1 hs
U133_X3P:232741_3P_AT Glutamate dehydrogenase 1 hs
HG-U133_PLUS_2:232703_AT Glutamate dehydrogenase 1 hs
HG-U133B:232703_AT Glutamate dehydrogenase 1 hs
HG-U95C:58711_AT Glutamate dehydrogenase 1 hs
HG-U95E:78904_AT Glutamate dehydrogenase 1 hs
HU35KSUBB:RC_T77866_AT Glutamate dehydrogenase 1 hs
MOE430A:1416209_AT glutamate dehydrogenase 1 mm
MOUSE430A_2:1416209_AT glutamate dehydrogenase 1 mm
MOUSE430_2:1416209_AT glutamate dehydrogenase 1 mm
MU11KSUBB:X57024_F_AT glutamate dehydrogenase 1 mm
MU11KSUBB:MSA.2314.0_F_AT glutamate dehydrogenase 1 mm
MG-U74AV2:92586_AT glutamate dehydrogenase 1 mm
MG-U74AV2:162364_F_AT glutamate dehydrogenase 1 mm
MOE430A:1448253_AT glutamate dehydrogenase 1 mm
MOUSE430A_2:1448253_AT glutamate dehydrogenase 1 mm
MOUSE430_2:1448253_AT glutamate dehydrogenase 1 mm
MU19KSUBA:TC23142_AT Glutamate dehydrogenase 1 (Glud1), mRNA mm
MU19KSUBB:TC30372_F_AT Glutamate dehydrogenase 1 (Glud1), mRNA mm
MU19KSUBB:TC30373_AT Glutamate dehydrogenase 1 (Glud1), mRNA mm
RN-U34:RC_AI179613_AT glutamate dehydrogenase 1 rn
RG-U34A:RC_AI179613_AT glutamate dehydrogenase 1 rn
RN-U34:RC_AI233216_AT glutamate dehydrogenase 1 rn
RG-U34A:RC_AI233216_AT glutamate dehydrogenase 1 rn
RAE230A:1370200_AT glutamate dehydrogenase 1 rn
RAT230_2:1370200_AT glutamate dehydrogenase 1 rn
RAE230A:1387878_AT glutamate dehydrogenase 1 rn
RAT230_2:1387878_AT glutamate dehydrogenase 1 rn
RN-U34:RC_AI137421_AT glutamate dehydrogenase 1 rn
RG-U34A:RC_AI137421_AT glutamate dehydrogenase 1 rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6520 amino acid metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16491 oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA98074 Hypothetical protein ZK829.4 [Caenorhabditis elegans] ref|NP_502267.1| ZK829.4 [Caenorhabditis elegans] 0.0
blast CAE62153 Hypothetical protein CBG06199 [Caenorhabditis briggsae] 0.0
blast AAC19750 putative glutamate dehydrogenase [Haemonchus contortus] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR006096 EMBL-EBI Glu/Leu/Phe/Val dehydrogenase, C terminal 2.2E-108
Pfam IPR006097 EMBL-EBI Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 6.8E-58
Sequence
Target Sequence 
>C. ELEGANS:172994_AT
atcaaatggctccaagccaggtttaaatagcttcgtgtaaccctttagtgccttttccat
agttttctgtttcgaaactatntaggttaactaaagtctagctctgatcttttctgcctg
gttcgttctcactttagtataatta

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCAAATGGCTCCAAGCCAGGTTTA 590 25 107 Antisense
GGCTCCAAGCCAGGTTTAAATAGCT 330 539 114 Antisense
GCCAGGTTTAAATAGCTTCGTGTAA 97 271 122 Antisense
AATAGCTTCGTGTAACCCTTTAGTG 62 111 132 Antisense
TTTAGTGCCTTTTCCATAGTTTTCT 497 673 150 Antisense
GCCTTTTCCATAGTTTTCTGTTTCG 459 281 156 Antisense
TTCCATAGTTTTCTGTTTCGAAACT 445 683 161 Antisense
GGTTAACTAAAGTCTAGCTCTGATC 560 505 191 Antisense
AAAGTCTAGCTCTGATCTTTTCTGC 86 123 199 Antisense
CTGGTTCGTTCTCACTTTAGTATAA 582 235 224 Antisense
GTTCGTTCTCACTTTAGTATAATTA 214 441 227 Antisense
Sequence Source Affymetrix Proprietary Database