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[172993_at]

Description C57227_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=C57227 /DEF=C.elegans cDNA clone yk300g9 : 3prime end, single read.
Cluster 6grp_total > 52      4grp_total > 0      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 1.6
(-3)
A 		6.4
(-1.7)
A 		13.3
(0.1)
A 		24
(3)
A 		22
B 9.4
(3)
A 		5.1
(-0.3)
A 		1.5
(-3)
A 		5.6
(0.1)
A 		8
C 7.8
(-0.9)
A 		2.4
(-3)
A 		17.5
(3)
A 		5.2
(-1.9)
A 		15
avr 6.3
(-1.5) 		4.6
(-3) 		10.8
(2.3) 		11.6
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 2.5
(-3)
A 		2.9
(-2.4)
A 		6.2
(3)
A 		4
(-0.6)
A 		4.6
(0.4)
A 		4.4
(0.1)
A 		4
B 3.6
(-0.8)
A 		1.4
(-3)
A 		7.5
(3)
A 		3.5
(-0.9)
A 		1.6
(-2.8)
A 		1.5
(-2.9)
A 		6
C 2.2
(-2.2)
A 		7.7
(3)
A 		6
(1.4)
A 		4.8
(0.3)
A 		1.7
(-2.6)
A 		1.3
(-3)
A 		6
avr 2.8
(-2.4) 		4
(-0.7) 		6.6
(3) 		4.1
(-0.6) 		2.6
(-2.7) 		2.4
(-3) 		4
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 0.6
(-3)
A 		1.4
(-1.3)
A 		3.5
(3)
A 		3.5
(3)
A 		3
B 3
(3)
A 		1.3
(-0.9)
A 		0.4
(-3)
A 		1.2
(-1.2)
A 		3
C 2.6
(-0.9)
A 		0.7
(-3)
A 		6.1
(3)
A 		0.9
(-2.8)
A 		5
avr 2.1
(-0.3) 		1.1
(-3) 		3.3
(3) 		1.9
(-0.8) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2
1 2 3 4 5 6 range
A 0.5
(-3)
A 		1
(0.3)
A 		1.4
(3)
A 		1
(0.3)
A 		1.4
(3)
A 		1.1
(1)
A 		1
B 1.3
(0.7)
A 		0.5
(-3)
A 		1.8
(3)
A 		0.9
(-1.2)
A 		0.6
(-2.5)
A 		0.6
(-2.5)
A 		1
C 0.8
(-1.7)
A 		2.3
(3)
A 		1.5
(0.5)
A 		1
(-1.1)
A 		0.5
(-2.7)
A 		0.4
(-3)
A 		2
avr 0.9
(-1.7) 		1.3
(1) 		1.6
(3) 		1
(-1) 		0.8
(-2.3) 		0.7
(-3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 172993_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26579
Sequence Type Exemplar sequence
Representative Public ID C57227 NCBI
Target Description C57227_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=C57227 /DEF=C.elegans cDNA clone yk300g9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a UniGene identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) C57227
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C57227 C57227_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=C57227 /DEF=C.elegans cDNA clone yk300g9 : 3prime end, single read. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_060791 11/11 Negative Strand Matching Probes A 
GENEFINDER00000024107 11/11 Negative Strand Matching Probes None
SNAP00000024086 11/11 Negative Strand Matching Probes None
T07D10.1 11/11 Negative Strand Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12613396-12614263(+) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:172993_AT
acacacggcgacagtgttctcgggtacgtggatctgtggattttcgagcagcttccgcaa
gagcctctgcacttttagacggtcttgactgtagatttgtggattcttggagctctgacg
gtagttttgtgctccacagaagaaggtgtggctgggcgtacggattgtgtgcaggccggg
aatgttctcgaattggtggagtgtgttgggcacttttcgttcacgacgcagctttatttg
gt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACACACGGCGACAGTGTTCTCGGGT 263 111 16 Antisense
GTTCTCGGGTACGTGGATCTGTGGA 114 443 31 Antisense
TTTTCGAGCAGCTTCCGCAAGAGCC 468 677 56 Antisense
CCTCTGCACTTTTAGACGGTCTTGA 96 267 79 Antisense
TTGTGGATTCTTGGAGCTCTGACGG 66 709 112 Antisense
GCTCTGACGGTAGTTTTGTGCTCCA 29 301 127 Antisense
GAAGAAGGTGTGGCTGGGCGTACGG 579 335 154 Antisense
GGGCGTACGGATTGTGTGCAGGCCG 66 493 169 Antisense
GCAGGCCGGGAATGTTCTCGAATTG 189 309 186 Antisense
AGTGTGTTGGGCACTTTTCGTTCAC 200 59 215 Antisense
CGTTCACGACGCAGCTTTATTTGGT 563 247 233 Antisense
Sequence Source Affymetrix Proprietary Database