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[172992_s_at] WD domain, G-beta repeat (2 domains)

Description C55771_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=C55771 /DEF=C.elegans cDNA clone yk222h2 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 97      6grp_high1_10_10 > 89      4grp_highest_8_8 > 10      4grp_high_8_8 > 54      6grp_highest_nonorm > 88      6grp_total > 98      4grp_total > 56      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Increase      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1513
1 2 3 4 range
A 1083.4
(-3)
P 		1962.4
(2.4)
P 		2067.3
(3)
P 		1250.4
(-2)
P 		984
B 1161.8
(-2.3)
P 		1835.4
(0.7)
P 		2371.8
(3)
P 		990.8
(-3)
P 		1381
C 1176.9
(-1.6)
P 		1868.9
(1.6)
P 		2181.7
(3)
P 		858.6
(-3)
P 		1323
avr 1140.7
(-2.5) 		1888.9
(1.4) 		2206.9
(3) 		1033.3
(-3) 		1174

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1881
1 2 3 4 5 6 range
A 1228.8
(-1.3)
P 		1209.8
(-1.4)
P 		750.4
(-3)
P 		1003.9
(-2.1)
P 		1425.8
(-0.6)
P 		2439.3
(3)
P 		1689
B 1269.9
(0.6)
P 		558.6
(-3)
P 		893.4
(-1.3)
P 		938.7
(-1.1)
P 		1610.7
(2.4)
P 		1733.4
(3)
P 		1175
C 1235.7
(-0.3)
P 		644
(-3)
P 		1055.6
(-1.1)
P 		1061.3
(-1.1)
P 		1763.1
(2.1)
P 		1957.6
(3)
P 		1314
avr 1244.8
(-0.9) 		804.1
(-3) 		899.8
(-2.5) 		1001.3
(-2) 		1599.9
(0.9) 		2043.4
(3) 		1239
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 616
1 2 3 4 range
A 394.5
(0.6)
P 		426
(1.1)
P 		540.4
(3)
P 		183
(-3)
P 		357
B 370.5
(-0.2)
P 		453.3
(1.3)
P 		549.6
(3)
P 		211.1
(-3)
P 		339
C 389.6
(-0.6)
P 		537.3
(0.8)
P 		760.4
(3)
P 		144.8
(-3)
P 		616
avr 384.9
(-0.2) 		472.2
(1) 		616.8
(3) 		179.6
(-3) 		437

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 492
1 2 3 4 5 6 range
A 226.5
(-2.1)
P 		430.3
(0.7)
P 		163.4
(-3)
P 		254.6
(-1.7)
P 		430.3
(0.7)
P 		593.9
(3)
P 		431
B 441.8
(0.3)
P 		185.9
(-3)
P 		216.9
(-2.6)
P 		248.6
(-2.2)
P 		654.4
(3)
P 		646.4
(2.9)
P 		469
C 458
(0.4)
P 		196.5
(-3)
P 		268.7
(-2.1)
P 		213.4
(-2.8)
P 		570.5
(1.9)
P 		655.3
(3)
P 		459
avr 375.4
(-0.7) 		270.9
(-2.2) 		216.3
(-3) 		238.9
(-2.7) 		551.7
(1.8) 		631.9
(3) 		416
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172992_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26548
Sequence Type Exemplar sequence
Representative Public ID C55771 NCBI
Target Description C55771_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=C55771 /DEF=C.elegans cDNA clone yk222h2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064478(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064478 NCBI Caenorhabditis elegans Y54G9A.6 (Y54G9A.6) mRNA, complete cds. 11/11 A 
SNAP00000011609 ENSEMBL cdna:SNAP chromosome:CEL140:II:13725978:13729360:1 11/11 None
GENEFINDER00000011616 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:13725978:13729360:1 11/11 None
Y54G9A.6 ENSEMBL cdna:known chromosome:CEL140:II:13725975:13729506:1 gene:Y54G9A.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:13729197-13729435(+) 78.33 78.33
Public Domain and Genome References
Gene Title WD domain, G-beta repeat (2 domains)
Ensembl Y54G9A.6
Entrez Gene 175018 Entrez gene
SwissProt Q9XWH0 EMBL-EBI
WormBase CE19233 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21698 Hypothetical protein Y54G9A.6 [Caenorhabditis elegans] ref|NP_496879.1| Y54G9A.6 [Caenorhabditis elegans] 0.0
blast CAE73278 Hypothetical protein CBG20696 [Caenorhabditis briggsae] 1.0E-179
blast CAE73279 Hypothetical protein CBG20697 [Caenorhabditis briggsae] 2.0E-80
Protein Domains
Database ID Description E-Value
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.049
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 8.8E-9
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 6.2E-7
Sequence
Target Sequence 
>C. ELEGANS:172992_S_AT
cagcttgcgatagccacatcctatcaatacgagaaggaaattgatccatcaccactgcca
aataattcgatcaccattcgccacattaccgatccggagagcagaccgaaata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAGCTTGCGATAGCCACATCCTATC 500 203 121 Antisense
GCGATAGCCACATCCTATCAATACG 159 291 127 Antisense
AGCCACATCCTATCAATACGAGAAG 684 83 132 Antisense
ATCCATCACCACTGCCAAATAATTC 207 39 164 Antisense
CCATCACCACTGCCAAATAATTCGA 476 271 166 Antisense
ACCACTGCCAAATAATTCGATCACC 652 85 171 Antisense
TAATTCGATCACCATTCGCCACATT 209 635 183 Antisense
TTCGCCACATTACCGATCCGGAGAG 546 697 197 Antisense
GCCACATTACCGATCCGGAGAGCAG 484 279 200 Antisense
ATTACCGATCCGGAGAGCAGACCGA 289 13 205 Antisense
CCGATCCGGAGAGCAGACCGAAATA 617 263 209 Antisense
Sequence Source Affymetrix Proprietary Database