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[172989_s_at] zinc carboxypeptidase

Description C52742_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=C52742 /DEF=C.elegans cDNA clone yk272c9 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 08      6grp_high1_10_10 > 43      4grp_highest_8_8 > 10      4grp_high_8_8 > 55      6grp_highest_nonorm > 62      6grp_total > 10      4grp_total > 48      6grp_high1_sub > 02      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1859
1 2 3 4 range
A 53.7
(-3)
P 		1026.8
(0.7)
P 		1646.2
(3)
P 		89.6
(-2.9)
P 		1593
B 47.2
(-3)
P 		1203.7
(1.1)
P 		1740.5
(3)
P 		60.8
(-3)
P 		1693
C 91.5
(-3)
P 		1199.8
(0.7)
P 		1905.9
(3)
P 		135.5
(-2.9)
P 		1814
avr 64.1
(-3) 		1143.4
(0.8) 		1764.2
(3) 		95.3
(-2.9) 		1700

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 948
1 2 3 4 5 6 range
A 92.2
(-3)
P 		818.6
(3)
P 		600.4
(1.2)
P 		591.2
(1.1)
P 		546.4
(0.8)
P 		338.7
(-1)
P 		726
B 106.8
(-3)
P 		1040.6
(3)
P 		673.7
(0.6)
P 		573.7
(0)
P 		610.6
(0.2)
P 		515.5
(-0.4)
P 		934
C 138.1
(-3)
P 		1022.1
(3)
P 		501
(-0.5)
P 		643.6
(0.4)
P 		513.9
(-0.4)
P 		458.1
(-0.8)
P 		884
avr 112.4
(-3) 		960.4
(3) 		591.7
(0.4) 		602.8
(0.5) 		557
(0.1) 		437.4
(-0.7) 		848
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 651
1 2 3 4 range
A 19.6
(-2.9)
P 		222.9
(0)
P 		430.4
(3)
P 		13.1
(-3)
P 		417
B 15.1
(-3)
P 		297.3
(1.4)
P 		403.3
(3)
P 		12.9
(-3)
P 		390
C 30.3
(-2.9)
P 		345
(0)
P 		664.3
(3)
P 		22.8
(-3)
P 		642
avr 21.7
(-2.9) 		288.4
(0.4) 		499.3
(3) 		16.3
(-3) 		483

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 329
1 2 3 4 5 6 range
A 17
(-3)
P 		291.1
(3)
P 		130.8
(-0.5)
P 		149.9
(-0.1)
P 		164.9
(0.2)
P 		82.5
(-1.6)
P 		274
B 37.2
(-3)
P 		346.4
(3)
P 		163.6
(-0.5)
P 		152
(-0.8)
P 		248.1
(1.1)
P 		192.2
(0)
P 		309
C 51.2
(-3)
P 		311.9
(3)
P 		127.5
(-1.2)
P 		129.4
(-1.2)
P 		166.3
(-0.4)
P 		153.3
(-0.7)
P 		261
avr 35.1
(-3) 		316.5
(3) 		140.6
(-0.8) 		143.8
(-0.7) 		193.1
(0.4) 		142.7
(-0.7) 		281
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172989_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26470
Sequence Type Exemplar sequence
Representative Public ID C52742 NCBI
Target Description C52742_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=C52742 /DEF=C.elegans cDNA clone yk272c9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059776(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059776 NCBI Caenorhabditis elegans R11A5.7 (R11A5.7) mRNA, complete cds. 11/11 A 
GENEFINDER00000037593 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:7880391:7883075:-1 11/11 None
R11A5.7.1 ENSEMBL cdna:known chromosome:CEL140:I:7880188:7883680:-1 gene:R11A5.7 11/11 None
R11A5.7.2 ENSEMBL cdna:known chromosome:CEL140:I:7880188:7883686:-1 gene:R11A5.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000037587 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7880302-7880637(-) 80.0 84.33
Public Domain and Genome References
Gene Title zinc carboxypeptidase
Ensembl R11A5.7
Entrez Gene 172557 Entrez gene
SwissProt Q9XU75 EMBL-EBI
WormBase CE32478 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4180 carboxypeptidase activity inferred from electronic annotation QuickGO AmiGO
4182 carboxypeptidase A activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB05602 Hypothetical protein R11A5.7 [Caenorhabditis elegans] ref|NP_492177.2| R11A5.7 [Caenorhabditis elegans] 0.0
blast CAE63736 Hypothetical protein CBG08265 [Caenorhabditis briggsae] 0.0
blast CAE54930 Hypothetical protein ZC434.9b [Caenorhabditis elegans] ref|NP_001021852.1| ZC434.9b [Caenorhabditis elegans] 1.0E-108
Protein Domains
Database ID Description E-Value
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 1.9E-11
Pfam IPR000834 EMBL-EBI Peptidase M14, carboxypeptidase A 6.4E-41
Pfam IPR000834 EMBL-EBI Peptidase M14, carboxypeptidase A 2.9E-30
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 1.9E-11
Pfam IPR000834 EMBL-EBI Peptidase M14, carboxypeptidase A 6.4E-41
Pfam IPR000834 EMBL-EBI Peptidase M14, carboxypeptidase A 2.9E-30
Sequence
Target Sequence 
>C. ELEGANS:172989_S_AT
ggggtaattcgatcatcttcaatagcttcgagagcaactacatatggattnttcactgct
acnaaaccatcagcatttntggatcccgaatgcagagatatgagatattcgtgtggattt
tggctgaaaaacaacaaacaagtgtgtgaggagcaacaatcatttatgcgtgctcaatgt
gcatatacctgtaaattctgcacgtcgttcatc

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGGTAATTCGATCATCTTCAATAG 146 497 69 Antisense
GATCATCTTCAATAGCTTCGAGAGC 394 419 79 Antisense
GCTTCGAGAGCAACTACATATGGAT 14 307 93 Antisense
GGATCCCGAATGCAGAGATATGAGA 642 509 149 Antisense
GAGATATTCGTGTGGATTTTGGCTG 69 393 170 Antisense
AAGTGTGTGAGGAGCAACAATCATT 129 159 208 Antisense
GCAACAATCATTTATGCGTGCTCAA 465 319 221 Antisense
ATCATTTATGCGTGCTCAATGTGCA 320 31 227 Antisense
GTGCTCAATGTGCATATACCTGTAA 399 479 238 Antisense
ATACCTGTAAATTCTGCACGTCGTT 381 23 253 Antisense
CTGTAAATTCTGCACGTCGTTCATC 500 239 257 Antisense
Sequence Source Affymetrix Proprietary Database