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[172987_s_at]

Description C35076_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=C35076 /DEF=C.elegans cDNA clone yk423d1 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 97      6grp_high1_10_10 > 89      4grp_high_8_8 > 12      6grp_highest_nonorm > 90      6grp_total > 99      4grp_total > 12      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 136
1 2 3 4 range
A 81.6
(-1.4)
P 		86.4
(-1.1)
P 		56.2
(-3)
P 		153.1
(3)
P 		97
B 105.7
(2.1)
P 		64.9
(-1.7)
A 		51
(-3)
P 		115.2
(3)
P 		64
C 87.4
(-1)
P 		44.3
(-2.9)
P 		41.2
(-3)
M 		176.9
(3)
P 		136
avr 91.6
(-0.4) 		65.2
(-2) 		49.5
(-3) 		148.4
(3) 		99

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 96
1 2 3 4 5 6 range
A 128.7
(3)
P 		56.9
(-3)
P 		115
(1.9)
P 		69.5
(-1.9)
P 		110.3
(1.5)
P 		127.9
(2.9)
P 		72
B 109.4
(0.4)
P 		56.1
(-3)
P 		100.2
(-0.2)
P 		82.6
(-1.3)
P 		132.3
(1.8)
P 		151.4
(3)
P 		95
C 73.1
(-1.9)
P 		112
(0.6)
P 		78.8
(-1.5)
P 		55.9
(-3)
P 		148.3
(3)
P 		146.3
(2.9)
P 		92
avr 103.7
(-0.2) 		75
(-2.5) 		98
(-0.6) 		69.3
(-3) 		130.3
(2) 		141.9
(3) 		73
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 29.7
(3)
P 		18.7
(-1.4)
P 		14.7
(-3)
P 		22.4
(0.1)
P 		15
B 33.7
(3)
P 		16
(-1.8)
A 		11.8
(-3)
P 		24.5
(0.5)
P 		22
C 28.9
(2.7)
P 		12.7
(-3)
P 		14.3
(-2.4)
M 		29.8
(3)
P 		17
avr 30.8
(3) 		15.8
(-2.2) 		13.6
(-3) 		25.6
(1.2) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 23.7
(-0.7)
P 		20.2
(-2)
P 		25
(-0.2)
P 		17.6
(-3)
P 		33.3
(3)
P 		31.1
(2.2)
P 		16
B 38.1
(0.1)
P 		18.7
(-3)
P 		24.3
(-2.1)
P 		21.9
(-2.5)
P 		53.7
(2.6)
P 		56.5
(3)
P 		38
C 27.1
(-0.5)
P 		34.2
(0.7)
P 		20.1
(-1.6)
P 		11.2
(-3)
P 		48
(2.8)
P 		49
(3)
P 		38
avr 29.6
(-0.3) 		24.4
(-1.4) 		23.1
(-1.7) 		16.9
(-3) 		45
(2.9) 		45.5
(3) 		29
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172987_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26352
Sequence Type Exemplar sequence
Representative Public ID C35076 NCBI
Target Description C35076_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=C35076 /DEF=C.elegans cDNA clone yk423d1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065023(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065023 NCBI Caenorhabditis elegans Y22D7AL.7 (Y22D7AL.7) mRNA, complete cds. 11/11 A 
GENEFINDER00000002275 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:1576746:1580865:1 11/11 None
SNAP00000002263 ENSEMBL cdna:SNAP chromosome:CEL140:III:1576826:1598456:1 9/11 None
Y22D7AL.7 ENSEMBL cdna:known chromosome:CEL140:III:1576746:1580784:1 gene:Y22D7AL.7 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:1579277-1580784(+) 78.33 100.0
Public Domain and Genome References
Gene Title
Ensembl Y22D7AL.7
Entrez Gene 175312 Entrez gene
SwissProt Q965Q5 EMBL-EBI
WormBase CE27245 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK84596 Hypothetical protein Y22D7AL.7 [Caenorhabditis elegans] ref|NP_497424.1| Y22D7AL.7 [Caenorhabditis elegans] 0.0
blast AAK84596 Hypothetical protein Y22D7AL.7 [Caenorhabditis elegans] ref|NP_497424.1| Y22D7AL.7 [Caenorhabditis elegans] 1.0E-167
blast AAK84596 Hypothetical protein Y22D7AL.7 [Caenorhabditis elegans] ref|NP_497424.1| Y22D7AL.7 [Caenorhabditis elegans] 1.0E-151
blast CAE69182 Hypothetical protein CBG15216 [Caenorhabditis briggsae] 5.0E-81
blast CAE69182 Hypothetical protein CBG15216 [Caenorhabditis briggsae] 7.0E-60
blast CAE69182 Hypothetical protein CBG15216 [Caenorhabditis briggsae] 2.0E-55
Sequence
Target Sequence 
>C. ELEGANS:172987_S_AT
agcatcgcggatatctgatggatgataacttgaaaaaagcacgtcaacgcatcgcccatg
ttcatccaaaacgacgcatcgggcacgtggcgctggatctgaatatcgacaaaaattcga
gtttcgctccgccgccgccgccgccactgcaaaaaatcaataatgacggcgtcgacgacg
atgatgatgatgatgacgtcatcatgcgttcagcacggaaaatgacggaattggtgttgg
ctgatatgcgaaaatct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCATCGCGGATATCTGATGGATGA 163 79 17 Antisense
CGCCCATGTTCATCCAAAACGACGC 642 255 69 Antisense
AAAACGACGCATCGGGCACGTGGCG 499 131 84 Antisense
CACGTGGCGCTGGATCTGAATATCG 110 199 100 Antisense
GGCGCTGGATCTGAATATCGACAAA 206 543 105 Antisense
GACAAAAATTCGAGTTTCGCTCCGC 242 351 124 Antisense
CAATAATGACGGCGTCGACGACGAT 646 179 174 Antisense
CGTCATCATGCGTTCAGCACGGAAA 512 245 213 Antisense
GCGTTCAGCACGGAAAATGACGGAA 152 289 222 Antisense
ATGACGGAATTGGTGTTGGCTGATA 499 43 238 Antisense
GGTGTTGGCTGATATGCGAAAATCT 535 485 249 Antisense
Sequence Source Affymetrix Proprietary Database