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[172986_s_at]

Description C57608_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=C57608 /DEF=C.elegans cDNA clone yk306d4 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 65      6grp_high1_10_10 > 45      4grp_highest_8_8 > 39      4grp_high_8_8 > 04      6grp_highest_nonorm > 87      6grp_total > 56      4grp_total > 04      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2897
1 2 3 4 range
A 1559.8
(-1)
P 		1136.3
(-2.2)
P 		835.2
(-3)
P 		2998.6
(3)
P 		2163
B 1551.8
(-1.8)
P 		1124
(-2.9)
P 		1080.5
(-3)
P 		3481
(3)
P 		2401
C 1608.1
(-1.3)
P 		767
(-3)
P 		835.3
(-2.9)
P 		3664.4
(3)
P 		2897
avr 1573.2
(-1.4) 		1009.1
(-2.8) 		917
(-3) 		3381.3
(3) 		2464

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1266
1 2 3 4 5 6 range
A 983.5
(-2.2)
P 		1995.9
(3)
P 		965
(-2.3)
P 		836.5
(-3)
P 		911.2
(-2.6)
P 		1433.8
(0.1)
P 		1159
B 1018.3
(-1.3)
P 		1342.1
(1.3)
P 		911.2
(-2.2)
P 		1196.2
(0.2)
P 		807.4
(-3)
P 		1546.4
(3)
P 		739
C 995.5
(-1.7)
P 		1471.7
(0.7)
P 		1278.9
(-0.3)
P 		1013.6
(-1.6)
P 		729.6
(-3)
P 		1946.4
(3)
P 		1217
avr 999.1
(-1.7) 		1603.2
(2.7) 		1051.7
(-1.3) 		1015.4
(-1.6) 		816.1
(-3) 		1642.2
(3) 		826
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 524
1 2 3 4 range
A 567.9
(3)
P 		246.7
(-2.5)
P 		218.3
(-3)
P 		438.9
(0.8)
P 		350
B 494.9
(-0)
P 		277.6
(-2.7)
P 		250.4
(-3)
P 		741.8
(3)
P 		491
C 532.3
(1.7)
P 		220.5
(-3)
P 		291.1
(-1.9)
P 		617.9
(3)
P 		397
avr 531.7
(1.8) 		248.3
(-3) 		253.3
(-2.9) 		599.5
(3) 		351

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 529
1 2 3 4 5 6 range
A 181.3
(-3)
P 		709.8
(3)
P 		210.2
(-2.7)
P 		212.2
(-2.6)
P 		275
(-1.9)
P 		349.1
(-1.1)
P 		529
B 354.3
(-0.8)
P 		446.7
(0.8)
P 		221.3
(-3)
P 		316.8
(-1.4)
P 		328
(-1.2)
P 		576.6
(3)
P 		355
C 369
(-0.8)
P 		449.1
(0.3)
P 		325.5
(-1.4)
P 		203.8
(-3)
P 		236.1
(-2.6)
P 		651.6
(3)
P 		448
avr 301.5
(-1.8) 		535.2
(3) 		252.3
(-2.8) 		244.3
(-3) 		279.7
(-2.3) 		525.8
(2.8) 		291
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172986_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26595
Sequence Type Exemplar sequence
Representative Public ID C57608 NCBI
Target Description C57608_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=C57608 /DEF=C.elegans cDNA clone yk306d4 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060297(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060297 NCBI Caenorhabditis elegans ZC247.1 (ZC247.1) mRNA, complete cds. 11/11 A 
ZC247.1 ENSEMBL cdna:known chromosome:CEL140:I:10272440:10279640:-1 gene:ZC247.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10272427-10272917(-) 90.33 90.33
Public Domain and Genome References
Gene Title
Ensembl ZC247.1
Entrez Gene 172895 Entrez gene
SwissProt Q94378 EMBL-EBI
WormBase CE19306 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02312 Hypothetical protein ZC247.1 [Caenorhabditis elegans] ref|NP_492698.1| ZC247.1 [Caenorhabditis elegans] 0.0
blast CAE73801 Hypothetical protein CBG21351 [Caenorhabditis briggsae] 0.0
blast CAE73787 Hypothetical protein CBG21337 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR008572 EMBL-EBI Protein of unknown function DUF854 repeat 8.0E-33
Pfam IPR008572 EMBL-EBI Protein of unknown function DUF854 repeat 2.8E-32
Pfam IPR008572 EMBL-EBI Protein of unknown function DUF854 repeat 1.6E-28
Pfam IPR008572 EMBL-EBI Protein of unknown function DUF854 repeat 1.6E-28
Pfam IPR008572 EMBL-EBI Protein of unknown function DUF854 repeat 1.5E-27
Pfam IPR008572 EMBL-EBI Protein of unknown function DUF854 repeat 2.8E-32
Pfam IPR008572 EMBL-EBI Protein of unknown function DUF854 repeat 1.6E-28
Pfam IPR008572 EMBL-EBI Protein of unknown function DUF854 repeat 8.0E-33
Pfam IPR008572 EMBL-EBI Protein of unknown function DUF854 repeat 2.8E-32
Pfam IPR008572 EMBL-EBI Protein of unknown function DUF854 repeat 2.8E-32
Pfam IPR008572 EMBL-EBI Protein of unknown function DUF854 repeat 8.0E-33
Pfam IPR008572 EMBL-EBI Protein of unknown function DUF854 repeat 2.8E-32
Pfam IPR008572 EMBL-EBI Protein of unknown function DUF854 repeat 2.8E-32
Pfam IPR008572 EMBL-EBI Protein of unknown function DUF854 repeat 1.5E-27
Pfam IPR008572 EMBL-EBI Protein of unknown function DUF854 repeat 2.8E-32
Pfam IPR008572 EMBL-EBI Protein of unknown function DUF854 repeat 2.8E-32
Pfam IPR008572 EMBL-EBI Protein of unknown function DUF854 repeat 9.6E-33
Pfam IPR008572 EMBL-EBI Protein of unknown function DUF854 repeat 2.8E-32
Pfam IPR008572 EMBL-EBI Protein of unknown function DUF854 repeat 2.8E-32
Pfam IPR008572 EMBL-EBI Protein of unknown function DUF854 repeat 2.1E-31
Pfam IPR008572 EMBL-EBI Protein of unknown function DUF854 repeat 2.1E-27
Pfam IPR008572 EMBL-EBI Protein of unknown function DUF854 repeat 8.6E-27
Pfam IPR008572 EMBL-EBI Protein of unknown function DUF854 repeat 8.6E-27
Sequence
Target Sequence 
>C. ELEGANS:172986_S_AT
ccatggaatgccgtcgatcaaccgttcgcgccagactcagggaaatggacgaagttcggt
tggttggcgagcgggaggaaattgngcgtcagcgacgaccaattcgccgagcaagacaac
gcgttcgaaacatttgcaccatgcttta

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCATGGAATGCCGTCGATCAACCGT 277 263 74 Antisense
GTTCGCGCCAGACTCAGGGAAATGG 676 439 97 Antisense
GACTCAGGGAAATGGACGAAGTTCG 680 95 107 Antisense
GACGAAGTTCGGTTGGTTGGCGAGC 672 373 121 Antisense
TTCGGTTGGTTGGCGAGCGGGAGGA 152 655 128 Antisense
GTTGGTTGGCGAGCGGGAGGAAATT 704 431 132 Antisense
CGTCAGCGACGACCAATTCGCCGAG 659 245 160 Antisense
CGCCGAGCAAGACAACGCGTTCGAA 115 257 178 Antisense
AACGCGTTCGAAACATTTGCACCAT 29 147 191 Antisense
GCGTTCGAAACATTTGCACCATGCT 444 291 194 Antisense
TTCGAAACATTTGCACCATGCTTTA 664 695 197 Antisense
Sequence Source Affymetrix Proprietary Database