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[172985_at]

Description C56926_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=C56926 /DEF=C.elegans cDNA clone yk307g3 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 47      6grp_high1_10_10 > 74      4grp_highest_8_8 > 45      4grp_high_8_8 > 10      6grp_highest_nonorm > 90      6grp_total > 74      4grp_total > 22      6grp_cgc > 66      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 91
1 2 3 4 range
A 78.8
(-3)
P 		93.6
(-0.7)
P 		112
(2.1)
P 		118.2
(3)
P 		39
B 135.3
(3)
P 		54.3
(-3)
P 		71.7
(-1.7)
P 		97.9
(0.2)
P 		81
C 96.5
(3)
P 		79.2
(1)
P 		44.1
(-3)
P 		93.3
(2.6)
P 		52
avr 103.5
(3) 		75.7
(-3) 		75.9
(-3) 		103.1
(2.9) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 112
1 2 3 4 5 6 range
A 102.8
(0.6)
P 		50.9
(-3)
P 		137.5
(3)
P 		69.1
(-1.7)
P 		108.4
(1)
P 		98.1
(0.3)
P 		87
B 96.4
(-1.4)
P 		98.3
(-1.3)
P 		124.8
(0.5)
P 		163.3
(3)
P 		72.7
(-3)
P 		140.3
(1.5)
P 		91
C 55.7
(-3)
P 		90.9
(-0.1)
P 		82.1
(-0.8)
P 		128
(3)
P 		64.2
(-2.3)
P 		125.6
(2.8)
P 		72
avr 85
(-2.3) 		80
(-3) 		114.8
(2.1) 		120.1
(2.8) 		81.8
(-2.7) 		121.3
(3) 		41
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 28.7
(2.7)
P 		20.3
(-1.5)
P 		29.3
(3)
P 		17.3
(-3)
P 		12
B 43.1
(3)
P 		13.4
(-3)
P 		16.6
(-2.4)
P 		20.9
(-1.5)
P 		30
C 32
(3)
P 		22.8
(-0.3)
P 		15.4
(-3)
P 		15.7
(-2.9)
P 		17
avr 34.6
(3) 		18.8
(-2.7) 		20.4
(-2.1) 		18
(-3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 19
(-2.4)
P 		18.1
(-2.8)
P 		29.9
(1.9)
P 		17.5
(-3)
P 		32.7
(3)
P 		23.9
(-0.5)
P 		15
B 33.5
(-1.9)
P 		32.7
(-2.2)
P 		30.3
(-2.8)
P 		43.3
(0.6)
P 		29.5
(-3)
P 		52.3
(3)
P 		23
C 20.6
(-3)
P 		27.7
(-1)
P 		20.9
(-2.9)
P 		25.7
(-1.6)
P 		20.8
(-2.9)
P 		42
(3)
P 		21
avr 24.4
(-3) 		26.2
(-2.3) 		27
(-2) 		28.8
(-1.2) 		27.7
(-1.7) 		39.4
(3) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 172985_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26569
Sequence Type Exemplar sequence
Representative Public ID C56926 NCBI
Target Description C56926_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=C56926 /DEF=C.elegans cDNA clone yk307g3 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a UniGene identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) C56926
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C56926 C56926_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=C56926 /DEF=C.elegans cDNA clone yk307g3 : 3prime end, single read. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_072164 10/11 Negative Strand Matching Probes A 
R01B10.1a.2 10/11 Negative Strand Matching Probes A 
R01B10.1a.1 10/11 Negative Strand Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6046926-6048081(-) 89.67 89.67
Sequence
Target Sequence 
>C. ELEGANS:172985_AT
ttcggcacgagtcgaagttctcccatggcttctcccagatggtgacttggtacagagcac
ggcttccaccatccttgatttggcagttggaagaagtgatctcgtgagcctgcaactctc
ccttcttgcagttcgattcaccgacgagcacctcgagcttggtgctgattccagcgacaa
cttgggttgaggcctttgtgaccttaatcggggcgtagtagtaaggtccgttgttggatg
cctgatcgttgatgcctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCGGCACGAGTCGAAGTTCTCCCA 604 689 21 Antisense
GCTTCTCCCAGATGGTGACTTGGTA 578 305 48 Antisense
GTGACTTGGTACAGAGCACGGCTTC 674 481 62 Antisense
CTTCCACCATCCTTGATTTGGCAGT 72 219 83 Antisense
GAAGTGATCTCGTGAGCCTGCAACT 412 335 113 Antisense
TGCAGTTCGATTCACCGACGAGCAC 590 567 147 Antisense
CTCGAGCTTGGTGCTGATTCCAGCG 7 233 172 Antisense
TGGGTTGAGGCCTTTGTGACCTTAA 539 553 203 Antisense
GTGACCTTAATCGGGGCGTAGTAGT 260 465 218 Antisense
GTAAGGTCCGTTGTTGGATGCCTGA 316 235 241 Antisense
TTGGATGCCTGATCGTTGATGCCTT 90 707 254 Antisense
Sequence Source Affymetrix Proprietary Database