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[172984_s_at]

Description C58190_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=C58190 /DEF=C.elegans cDNA clone yk362h1 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 89      6grp_high1_10_10 > 99      4grp_high_8_8 > 29      6grp_highest_nonorm > 92      6grp_total > 99      4grp_total > 17      6grp_highest_sub > In      6grp_total_sub > Increase      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 424
1 2 3 4 range
A 206.6
(-3)
P 		446
(0.9)
P 		313.1
(-1.2)
P 		570.6
(3)
P 		364
B 312.3
(-3)
P 		318.8
(-2.9)
A 		377.2
(-1.6)
P 		588.1
(3)
P 		276
C 263.6
(-3)
P 		395.3
(-0.8)
A 		292.8
(-2.5)
P 		630.7
(3)
P 		367
avr 260.8
(-3) 		386.7
(-0.7) 		327.7
(-1.8) 		596.5
(3) 		336

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 319
1 2 3 4 5 6 range
A 187.2
(-2.2)
P 		205.5
(-1.8)
P 		144.3
(-3)
P 		213
(-1.7)
P 		452.9
(3)
P 		397.7
(1.9)
P 		309
B 190.6
(-3)
P 		211.6
(-2.5)
P 		232.5
(-2.1)
P 		190.2
(-3)
P 		463.3
(3)
P 		369.7
(0.9)
P 		273
C 283.4
(0.1)
P 		197.1
(-3)
P 		270.5
(-0.4)
P 		276.8
(-0.2)
P 		326.4
(1.6)
P 		365.2
(3)
P 		168
avr 220.4
(-2.6) 		204.7
(-3) 		215.8
(-2.7) 		226.7
(-2.4) 		414.2
(3) 		377.5
(1.9) 		210
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 75.2
(-3)
P 		96.8
(3)
P 		81.9
(-1.1)
P 		83.5
(-0.7)
P 		22
B 99.6
(-0.3)
P 		78.7
(-3)
A 		87.4
(-1.9)
P 		125.3
(3)
P 		47
C 87.3
(-3)
P 		113.7
(3)
A 		102.1
(0.4)
P 		106.3
(1.3)
P 		26
avr 87.4
(-3) 		96.4
(0.1) 		90.5
(-1.9) 		105
(3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 157
1 2 3 4 5 6 range
A 34.5
(-2.8)
P 		73.1
(-0.6)
P 		31.4
(-3)
P 		54
(-1.7)
P 		136.7
(3)
P 		96.8
(0.7)
P 		105
B 66.3
(-2.3)
P 		70.4
(-2.1)
P 		56.5
(-2.7)
P 		50.4
(-3)
P 		188.3
(3)
P 		137.8
(0.8)
P 		138
C 105.1
(1.5)
P 		60.1
(-2.6)
P 		68.9
(-1.8)
P 		55.7
(-3)
P 		105.6
(1.5)
P 		122.2
(3)
P 		67
avr 68.6
(-1.9) 		67.9
(-2) 		52.3
(-3) 		53.4
(-2.9) 		143.5
(3) 		118.9
(1.4) 		91
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172984_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26608
Sequence Type Exemplar sequence
Representative Public ID C58190 NCBI
Target Description C58190_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=C58190 /DEF=C.elegans cDNA clone yk362h1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071328(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071328 NCBI Caenorhabditis elegans W02G9.2 (W02G9.2) mRNA, complete cds. 11/11 A 
SNAP00000022905 ENSEMBL cdna:SNAP chromosome:CEL140:V:2685550:2688196:1 11/11 None
GENEFINDER00000022908 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2682213:2688196:1 11/11 None
W02G9.2.1 ENSEMBL cdna:known chromosome:CEL140:V:2671259:2688327:1 gene:W02G9.2 11/11 A 
W02G9.2.2 ENSEMBL cdna:known chromosome:CEL140:V:2683051:2688327:1 gene:W02G9.2 11/11 A 
W02G9.2.3 ENSEMBL cdna:known chromosome:CEL140:V:2683053:2688327:1 gene:W02G9.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2686832-2688222(+) 99.58 99.58
Public Domain and Genome References
Gene Title
Ensembl W02G9.2
Entrez Gene 3565011 Entrez gene
SwissProt O61899 EMBL-EBI
WormBase CE36956 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.14936.1.S1_AT similar to kelch-like 8 cfa
CHICKEN:GGA.6792.1.A1_S_AT similar to kelch-like 8 gga
CHICKEN:GGA.6792.1.A1_X_AT similar to kelch-like 8 gga
CHICKEN:GGA.7835.1.S1_AT similar to kelch-like 8 gga
CHICKEN:GGAAFFX.6978.1.S1_S_AT similar to kelch-like 8 gga
HG-U133_PLUS_2:242648_AT kelch-like 8 (Drosophila) hs
HG-U133B:242648_AT kelch-like 8 (Drosophila) hs
HU35KSUBA:AA479146_AT kelch-like 8 (Drosophila) hs
HU35KSUBD:RC_AA490901_AT kelch-like 8 (Drosophila) hs
U133_X3P:HS2.434460.1.S1_3P_AT kelch-like 8 (Drosophila) hs
U133_X3P:HS.278054.0.S1_3P_AT kelch-like 8 (Drosophila) hs
U133_X3P:HS.107279.0.S1_3P_AT kelch-like 8 (Drosophila) hs
HG-U133_PLUS_2:1561206_AT kelch-like 8 (Drosophila) hs
HG-U133_PLUS_2:226874_AT kelch-like 8 (Drosophila) hs
HG-U133B:226874_AT kelch-like 8 (Drosophila) hs
HG-U95B:52292_AT kelch-like 8 (Drosophila) hs
HG-U95C:58498_AT kelch-like 8 (Drosophila) hs
HG-U95C:63705_F_AT kelch-like 8 (Drosophila) hs
HG-U95C:63906_F_AT kelch-like 8 (Drosophila) hs
HG-U95C:66581_AT kelch-like 8 (Drosophila) hs
HG-U133_PLUS_2:241913_AT Kelch-like 8 (Drosophila) hs
HG-U133B:241913_AT Kelch-like 8 (Drosophila) hs
HG-U95B:48253_AT Kelch-like 8 (Drosophila) hs
HG-U95B:50538_R_AT Kelch-like 8 (Drosophila) hs
HU35KSUBD:RC_AA350541_R_AT Kelch-like 8 (Drosophila) hs
HU35KSUBD:RC_AA350541_S_AT Kelch-like 8 (Drosophila) hs
MG-U74BV2:163897_I_AT kelch-like 8 (Drosophila) mm
MG-U74BV2:162684_AT kelch-like 8 (Drosophila) mm
MOE430B:1454637_AT kelch-like 8 (Drosophila) mm
MOUSE430_2:1454637_AT kelch-like 8 (Drosophila) mm
MOE430B:1433526_AT kelch-like 8 (Drosophila) mm
MOUSE430_2:1433526_AT kelch-like 8 (Drosophila) mm
MG-U74BV2:104830_AT kelch-like 8 (Drosophila) mm
MU19KSUBC:TC41680_AT kelch-like 8 (Drosophila) mm
RG-U34B:RC_AA851641_AT kelch-like 8 (Drosophila) (predicted) rn
RAE230A:1375851_AT kelch-like 8 (Drosophila) (predicted) rn
RAT230_2:1375851_AT kelch-like 8 (Drosophila) (predicted) rn
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5515 protein binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC17684 Hypothetical protein W02G9.2 [Caenorhabditis elegans] ref|NP_503729.3| W02G9.2 [Caenorhabditis elegans] 0.0
blast CAE62533 Hypothetical protein CBG06642 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR006652 EMBL-EBI Kelch repeat 1.3E-9
Pfam IPR006652 EMBL-EBI Kelch repeat 4.2E-13
Pfam IPR006652 EMBL-EBI Kelch repeat 2.7E-15
Pfam IPR006652 EMBL-EBI Kelch repeat 5.6E-14
Pfam IPR006652 EMBL-EBI Kelch repeat 3.0E-16
Pfam IPR006652 EMBL-EBI Kelch repeat 1.4E-17
Pfam IPR000210 EMBL-EBI BTB/POZ domain 3.1E-37
Pfam IPR006652 EMBL-EBI Kelch repeat 1.3E-9
Pfam IPR006652 EMBL-EBI Kelch repeat 4.2E-13
Pfam IPR006652 EMBL-EBI Kelch repeat 2.7E-15
Pfam IPR006652 EMBL-EBI Kelch repeat 5.6E-14
Pfam IPR006652 EMBL-EBI Kelch repeat 3.0E-16
Pfam IPR006652 EMBL-EBI Kelch repeat 1.4E-17
Pfam IPR006652 EMBL-EBI Kelch repeat 1.3E-9
Pfam IPR006652 EMBL-EBI Kelch repeat 4.2E-13
Pfam IPR006652 EMBL-EBI Kelch repeat 2.7E-15
Pfam IPR006652 EMBL-EBI Kelch repeat 5.6E-14
Pfam IPR006652 EMBL-EBI Kelch repeat 3.0E-16
Pfam IPR006652 EMBL-EBI Kelch repeat 1.4E-17
Pfam IPR000210 EMBL-EBI BTB/POZ domain 5.0E-33
Sequence
Target Sequence 
>C. ELEGANS:172984_S_AT
tacgcgattggagggcatgatggatcagattatntnaacaccgtngagtgntacgaccca
atcgcaaacngatggcagccggccgcagagatcaaagaatgccgtgccggagccggtgtc
gcctgggcaaatgtcagaatgcaccagctgagccgaaccccagagaagtgcgattcggga
tgtgctccatcaggc

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACGCGATTGGAGGGCATGATGGAT 169 647 14 Antisense
CAGCCGGCCGCAGAGATCAAAGAAT 245 203 89 Antisense
AGAGATCAAAGAATGCCGTGCCGGA 80 69 100 Antisense
TCAAAGAATGCCGTGCCGGAGCCGG 488 627 105 Antisense
CCGGTGTCGCCTGGGCAAATGTCAG 327 265 126 Antisense
GTCGCCTGGGCAAATGTCAGAATGC 440 475 131 Antisense
GTCAGAATGCACCAGCTGAGCCGAA 400 465 146 Antisense
TGAGCCGAACCCCAGAGAAGTGCGA 51 569 162 Antisense
GCCGAACCCCAGAGAAGTGCGATTC 139 283 165 Antisense
GAAGTGCGATTCGGGATGTGCTCCA 681 335 178 Antisense
CGATTCGGGATGTGCTCCATCAGGC 669 247 184 Antisense
Sequence Source Affymetrix Proprietary Database