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[172981_s_at]

Description C55077_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=C55077 /DEF=C.elegans cDNA clone yk350c4 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 75      6grp_high1_10_10 > 57      4grp_highest_8_8 > 44      4grp_high_8_8 > 16      6grp_highest_nonorm > 83      6grp_total > 58      4grp_total > 39      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 465
1 2 3 4 range
A 769.3
(3)
P 		317.7
(-3)
P 		462.8
(-1.1)
P 		508.1
(-0.5)
P 		452
B 782.8
(3)
P 		360.3
(-3)
P 		362.4
(-3)
P 		526.9
(-0.6)
P 		423
C 660.6
(3)
P 		388.4
(-3)
P 		433.6
(-2)
P 		458.1
(-1.5)
P 		272
avr 737.6
(3) 		355.5
(-3) 		419.6
(-2) 		497.7
(-0.8) 		382

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 421
1 2 3 4 5 6 range
A 579.1
(0.7)
P 		414.1
(-1.7)
P 		322.7
(-3)
P 		479.1
(-0.8)
P 		436.2
(-1.4)
P 		743.2
(3)
P 		421
B 589.7
(2.9)
P 		382.4
(-2.1)
P 		378.2
(-2.2)
P 		496.7
(0.6)
P 		343.5
(-3)
P 		595.4
(3)
P 		252
C 562.1
(0.4)
P 		512.6
(-0.6)
P 		527
(-0.3)
P 		391.8
(-3)
P 		405.3
(-2.7)
P 		694.4
(3)
P 		303
avr 577
(0.9) 		436.4
(-2.1) 		409.3
(-2.7) 		455.9
(-1.7) 		395
(-3) 		677.7
(3) 		283
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 211
1 2 3 4 range
A 280.1
(3)
P 		69
(-3)
P 		121
(-1.5)
P 		74.4
(-2.8)
P 		211
B 249.6
(3)
P 		89
(-2.8)
P 		84
(-3)
P 		112.3
(-2)
P 		166
C 218.7
(3)
P 		111.7
(-1.5)
P 		151.1
(0.1)
P 		77.2
(-3)
P 		142
avr 249.5
(3) 		89.9
(-2.9) 		118.7
(-1.9) 		88
(-3) 		162

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 162
1 2 3 4 5 6 range
A 106.7
(-1)
P 		147.3
(1.2)
P 		70.3
(-3)
P 		121.5
(-0.2)
P 		131.6
(0.3)
P 		180.9
(3)
P 		111
B 205.2
(2.2)
P 		127.3
(-1.4)
P 		91.8
(-3)
P 		131.6
(-1.2)
P 		139.6
(-0.8)
P 		222
(3)
P 		130
C 208.4
(2.1)
P 		156.4
(0)
P 		134.1
(-0.8)
P 		78.8
(-3)
P 		131.2
(-1)
P 		232.5
(3)
P 		154
avr 173.4
(1) 		143.7
(-0.6) 		98.7
(-3) 		110.6
(-2.4) 		134.1
(-1.1) 		211.8
(3) 		113
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172981_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26535
Sequence Type Exemplar sequence
Representative Public ID C55077 NCBI
Target Description C55077_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=C55077 /DEF=C.elegans cDNA clone yk350c4 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026531(11), NM_001026532(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026531 NCBI Caenorhabditis elegans Y105E8B.2a (Y105E8B.2) mRNA, complete cds. 11/11 None
NM_001026532 NCBI Caenorhabditis elegans Y105E8B.2b (Y105E8B.2) mRNA, complete cds. 11/11 None
SNAP00000011732 ENSEMBL cdna:SNAP chromosome:CEL140:I:14642744:14650679:-1 11/11 None
GENEFINDER00000011743 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:14642744:14647057:-1 11/11 None
Y105E8B.2a ENSEMBL cdna:known chromosome:CEL140:I:14642580:14650679:-1 gene:Y105E8B.2 11/11 A 
Y105E8B.2b.2 ENSEMBL cdna:known chromosome:CEL140:I:14642605:14650771:-1 gene:Y105E8B.2 11/11 A 
Y105E8B.2b.1 ENSEMBL cdna:known chromosome:CEL140:I:14642605:14650686:-1 gene:Y105E8B.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14642558-14643275(-) 89.33 97.33
Public Domain and Genome References
Ensembl Y105E8B.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAC70108 Hypothetical protein Y105E8B.2a [Caenorhabditis elegans] ref|NP_001021702.1| Y105E8B.2a [Caenorhabditis elegans] 0.0
blast CAE72605 Hypothetical protein CBG19796 [Caenorhabditis briggsae] 0.0
blast CAD91705 Hypothetical protein Y105E8B.2b [Caenorhabditis elegans] ref|NP_001021703.1| Y105E8B.2b [Caenorhabditis elegans] 1.0E-173
Sequence
Target Sequence 
>C. ELEGANS:172981_S_AT
tttttgcgtattccactacttttattctaaccatggtactcccagtgtgcgataaaatcc
tanacggcgaggaaggcgagctcattcgcctgattgatcaattccccagcctggctccgn
acgcagacccatctgatgaagagaa

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTTTGCGTATTCCACTACTTTTAT 389 675 13 Antisense
TATTCCACTACTTTTATTCTAACCA 675 663 21 Antisense
ATTCTAACCATGGTACTCCCAGTGT 411 11 36 Antisense
TAACCATGGTACTCCCAGTGTGCGA 518 637 40 Antisense
CATGGTACTCCCAGTGTGCGATAAA 559 209 44 Antisense
GGTACTCCCAGTGTGCGATAAAATC 650 503 47 Antisense
ACTCCCAGTGTGCGATAAAATCCTA 497 99 50 Antisense
ACGGCGAGGAAGGCGAGCTCATTCG 158 95 76 Antisense
CGAGCTCATTCGCCTGATTGATCAA 94 251 89 Antisense
TCGCCTGATTGATCAATTCCCCAGC 87 599 98 Antisense
ACGCAGACCCATCTGATGAAGAGAA 313 91 133 Antisense
Sequence Source Affymetrix Proprietary Database