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[172980_s_at]

Description C54825_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=C54825 /DEF=C.elegans cDNA clone yk406e7 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 67      6grp_high1_10_10 > 85      4grp_highest_8_8 > 26      4grp_high_8_8 > 57      6grp_highest_nonorm > 75      6grp_total > 99      4grp_total > 61      6grp_highest_sub > In      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 644
1 2 3 4 range
A 912.9
(3)
P 		635.9
(-0.8)
P 		765.2
(1)
P 		475
(-3)
P 		438
B 668.2
(-1.1)
P 		811.4
(3)
P 		798.9
(2.6)
P 		603.4
(-3)
P 		208
C 1042.6
(2.2)
P 		666.8
(-1.9)
P 		1119.3
(3)
P 		560.2
(-3)
P 		559
avr 874.6
(2.7) 		704.7
(-0.3) 		894.5
(3) 		546.2
(-3) 		348

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 671
1 2 3 4 5 6 range
A 496.8
(-3)
P 		774.8
(-0.5)
P 		1167.6
(3)
P 		734.4
(-0.9)
P 		1020.8
(1.7)
P 		933.1
(0.9)
P 		671
B 1139
(3)
P 		936.4
(-1.6)
P 		942.2
(-1.4)
P 		872.2
(-3)
P 		939.8
(-1.5)
P 		1127.8
(2.7)
P 		267
C 946.5
(3)
P 		857.4
(-0.2)
P 		832.2
(-1.1)
P 		777.5
(-3)
P 		901.6
(1.4)
P 		915.2
(1.9)
P 		169
avr 860.8
(-1) 		856.2
(-1.1) 		980.7
(2.7) 		794.7
(-3) 		954.1
(1.8) 		992
(3) 		197
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 321
1 2 3 4 range
A 332.4
(3)
P 		138
(-1.4)
P 		200
(-0)
P 		69.5
(-3)
P 		263
B 213.1
(3)
P 		200.4
(2.1)
P 		185.1
(1)
P 		128.6
(-3)
P 		85
C 345.1
(2.1)
P 		191.7
(-1)
P 		390.1
(3)
P 		94.5
(-3)
P 		296
avr 296.9
(3) 		176.7
(-0.6) 		258.4
(1.8) 		97.5
(-3) 		199

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 329
1 2 3 4 5 6 range
A 91.6
(-3)
P 		275.5
(2.1)
P 		254.3
(1.5)
P 		186.3
(-0.4)
P 		308
(3)
P 		227.2
(0.8)
P 		216
B 396.3
(2.2)
P 		311.7
(-0.4)
P 		228.8
(-3)
P 		231
(-2.9)
P 		381.8
(1.8)
P 		420.6
(3)
P 		192
C 350.8
(3)
P 		261.6
(0.2)
P 		211.8
(-1.3)
P 		156.4
(-3)
P 		291.8
(1.2)
P 		306.4
(1.6)
P 		194
avr 279.6
(0.9) 		282.9
(1) 		231.6
(-1.2) 		191.2
(-3) 		327.2
(3) 		318.1
(2.6) 		136
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172980_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26529
Sequence Type Exemplar sequence
Representative Public ID C54825 NCBI
Target Description C54825_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=C54825 /DEF=C.elegans cDNA clone yk406e7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058936(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058936 NCBI Caenorhabditis elegans C43E11.8 (C43E11.8) mRNA, complete cds. 11/11 A 
GENEFINDER00000031024 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:4242879:4247518:-1 11/11 None
SNAP00000031012 ENSEMBL cdna:SNAP chromosome:CEL140:I:4242939:4247518:-1 11/11 None
C43E11.8 ENSEMBL cdna:known chromosome:CEL140:I:4242843:4247581:-1 gene:C43E11.8 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4242915-4243172(-) 77.0 85.0
Public Domain and Genome References
Gene Title
Ensembl C43E11.8
Entrez Gene 172023 Entrez gene
SwissProt P91149 EMBL-EBI
WormBase CE08686 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:250950_AT exocyst subunit EXO70 family protein at
DROSOPHILA_2:1638635_AT dm
DROSGENOME1:153588_AT dm
CHICKEN:GGA.9898.1.S1_S_AT exocyst complex component 7 gga
HG-U133_PLUS_2:214802_AT exocyst complex component 7 hs
HG-U133A_2:214802_AT exocyst complex component 7 hs
HG-U133A:214802_AT exocyst complex component 7 hs
HG-U133_PLUS_2:215413_AT exocyst complex component 7 hs
HG-U133A_2:215413_AT exocyst complex component 7 hs
HG-U133A:215413_AT exocyst complex component 7 hs
HU35KSUBB:RC_F04479_AT exocyst complex component 7 hs
HU35KSUBD:RC_AA460231_AT exocyst complex component 7 hs
U133_X3P:HS.325530.1.A1_3P_A_AT exocyst complex component 7 hs
U133_X3P:HS.325530.0.A3_3P_A_AT exocyst complex component 7 hs
U133_X3P:HS.325530.0.A2_3P_A_AT exocyst complex component 7 hs
U133_X3P:HS.325530.0.A1_3P_A_AT exocyst complex component 7 hs
U133_X3P:HS.271273.0.S1_3P_X_AT exocyst complex component 7 hs
U133_X3P:HS.271273.0.S1_3P_AT exocyst complex component 7 hs
U133_X3P:214802_3P_AT exocyst complex component 7 hs
HG-U133A_2:212026_S_AT exocyst complex component 7 hs
HG-U133_PLUS_2:212026_S_AT exocyst complex component 7 hs
HG-U133A:212026_S_AT exocyst complex component 7 hs
HG-U133A_2:212034_S_AT exocyst complex component 7 hs
HG-U133_PLUS_2:212034_S_AT exocyst complex component 7 hs
HG-U133A:212034_S_AT exocyst complex component 7 hs
HG-U133A_2:212035_S_AT exocyst complex component 7 hs
HG-U133_PLUS_2:212035_S_AT exocyst complex component 7 hs
HG-U133A:212035_S_AT exocyst complex component 7 hs
HG-U95E:78336_AT exocyst complex component 7 hs
HU35KSUBC:RC_T23051_AT Exocyst complex component 7 hs
MOUSE430A_2:1434865_A_AT exocyst complex component 7 mm
MOE430A:1434865_A_AT exocyst complex component 7 mm
MOUSE430_2:1434865_A_AT exocyst complex component 7 mm
MU11KSUBA:AF014461_S_AT exocyst complex component 7 mm
MG-U74AV2:104345_AT exocyst complex component 7 mm
RG-U34A:AF032667_AT exocyst complex component 7 rn
RAE230A:1387237_AT exocyst complex component 7 rn
RAT230_2:1387237_AT exocyst complex component 7 rn
RAE230A:1368538_AT exocyst complex component 7 rn
RAT230_2:1368538_AT exocyst complex component 7 rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6887 exocytosis inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
145 exocyst inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB37623 Hypothetical protein C43E11.8 [Caenorhabditis elegans] ref|NP_491337.1| C43E11.8 [Caenorhabditis elegans] 0.0
blast CAE66813 Hypothetical protein CBG12178 [Caenorhabditis briggsae] 0.0
blast NP_073182 exocyst complex component 7 [Rattus norvegicus] sp|O54922|EXOC7_RAT Exocyst complex component 7 (Exocyst complex component Exo70) (rExo70) gb|AAC01579.1| rexo70 [Rattus norvegicus] 1.0E-39
Protein Domains
Database ID Description E-Value
Pfam IPR004140 EMBL-EBI Exo70 exocyst complex subunit 1.0E-126
Pfam IPR004140 EMBL-EBI Exo70 exocyst complex subunit 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:172980_S_AT
ggactattgcatttcggatccaaagatatctgccaacgttcaaacacaagtgaaatctcg
aatctggaagaattactcacaactattggacacttgccaacgcctacacgtcttcccaca
aggaattatatatactgtaaatacttttgaaatggctattcgaaatctattctcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGACTATTGCATTTCGGATCCAAAG 280 525 66 Antisense
CGGATCCAAAGATATCTGCCAACGT 527 243 80 Antisense
GATATCTGCCAACGTTCAAACACAA 403 425 90 Antisense
TCTGCCAACGTTCAAACACAAGTGA 170 605 94 Antisense
ACACAAGTGAAATCTCGAATCTGGA 240 111 109 Antisense
ATCTGGAAGAATTACTCACAACTAT 220 35 127 Antisense
TACTCACAACTATTGGACACTTGCC 431 645 139 Antisense
CACAACTATTGGACACTTGCCAACG 661 193 143 Antisense
CCTACACGTCTTCCCACAAGGAATT 197 269 168 Antisense
AAATACTTTTGAAATGGCTATTCGA 207 117 204 Antisense
ATGGCTATTCGAAATCTATTCTCAT 194 53 217 Antisense
Sequence Source Affymetrix Proprietary Database