[Home] | [Total List]

[172978_s_at]

Description C52715_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=C52715 /DEF=C.elegans cDNA clone yk249c7 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 64      6grp_high1_10_10 > 55      4grp_highest_8_8 > 45      4grp_high_8_8 > 09      6grp_highest_nonorm > 37      6grp_total > 45      4grp_total > 23      6grp_highest_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3900
1 2 3 4 range
A 8531.2
(3)
P 		6460.7
(-3)
P 		7234.2
(-0.8)
P 		8171.4
(2)
P 		2071
B 10360.2
(3)
P 		7681.6
(-2.1)
P 		7223.9
(-3)
P 		9414.1
(1.2)
P 		3136
C 8993.3
(2.2)
P 		7379.4
(-1.6)
P 		6795.3
(-3)
P 		9310.2
(3)
P 		2515
avr 9294.9
(3) 		7173.9
(-2.8) 		7084.5
(-3) 		8965.2
(2.1) 		2210

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4065
1 2 3 4 5 6 range
A 5650.2
(2)
P 		5623.9
(2)
P 		3633.4
(-3)
P 		4069.6
(-1.9)
P 		3865.9
(-2.4)
P 		6035.3
(3)
P 		2402
B 4260.7
(1.2)
P 		4261.2
(1.2)
P 		4124.8
(0.7)
P 		4825.8
(3)
P 		2979
(-3)
P 		4810
(2.9)
P 		1847
C 4404.1
(-1.5)
P 		4409.8
(-1.5)
P 		7044.4
(3)
P 		4110
(-2)
P 		3526.5
(-3)
P 		4525.2
(-1.3)
P 		3518
avr 4771.7
(1.7) 		4765
(1.7) 		4934.2
(2.3) 		4335.1
(0.2) 		3457.1
(-3) 		5123.5
(3) 		1666
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2108
1 2 3 4 range
A 3106.2
(3)
P 		1402.4
(-2.4)
P 		1891.2
(-0.8)
P 		1196.1
(-3)
P 		1910
B 3303.8
(3)
P 		1897.2
(-2.2)
P 		1673.9
(-3)
P 		2006.1
(-1.8)
P 		1630
C 2977
(3)
P 		2121.6
(-0.6)
P 		2368.4
(0.4)
P 		1569.8
(-3)
P 		1407
avr 3129
(3) 		1807.1
(-2.2) 		1977.8
(-1.5) 		1590.7
(-3) 		1538

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1209
1 2 3 4 5 6 range
A 1041.6
(-1.8)
P 		2000.1
(3)
P 		791.3
(-3)
P 		1032.1
(-1.8)
P 		1166.6
(-1.1)
P 		1469.4
(0.4)
P 		1209
B 1482.5
(0.6)
P 		1418.4
(0.2)
P 		1001.6
(-3)
P 		1278.2
(-0.9)
P 		1210.3
(-1.4)
P 		1793.6
(3)
P 		792
C 1632.4
(2)
P 		1345.6
(0.2)
P 		1792.9
(3)
P 		826.5
(-3)
P 		1141.1
(-1)
P 		1514.9
(1.3)
P 		966
avr 1385.5
(0.7) 		1588
(2.9) 		1195.3
(-1.4) 		1045.6
(-3) 		1172.7
(-1.6) 		1592.6
(3) 		547
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172978_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26467
Sequence Type Exemplar sequence
Representative Public ID C52715 NCBI
Target Description C52715_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=C52715 /DEF=C.elegans cDNA clone yk249c7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062573(11), NM_062572(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062573 NCBI Caenorhabditis elegans C34F11.3a (C34F11.3) mRNA, complete cds. 11/11 A 
NM_062572 NCBI Caenorhabditis elegans C34F11.3b (C34F11.3) mRNA, complete cds. 11/11 A 
SNAP00000021330 ENSEMBL cdna:SNAP chromosome:CEL140:II:5203674:5209645:1 11/11 None
GENEFINDER00000021343 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5202466:5209645:1 11/11 None
C34F11.3a.2 ENSEMBL cdna:known chromosome:CEL140:II:5203294:5209645:1 gene:C34F11.3 11/11 None
C34F11.3a.1 ENSEMBL cdna:known chromosome:CEL140:II:5203302:5209645:1 gene:C34F11.3 11/11 None
C34F11.3b ENSEMBL cdna:known chromosome:CEL140:II:5203331:5209778:1 gene:C34F11.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5209519-5209707(+) 77.92 77.92
Public Domain and Genome References
Ensembl C34F11.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAO21474 Hypothetical protein C34F11.3a [Caenorhabditis elegans] ref|NP_494974.2| C34F11.3a [Caenorhabditis elegans] 0.0
blast AAO21475 Hypothetical protein C34F11.3b [Caenorhabditis elegans] ref|NP_494973.2| C34F11.3b [Caenorhabditis elegans] 0.0
blast CAE59064 Hypothetical protein CBG02349 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001365 EMBL-EBI Adenosine/AMP deaminase 1.0E-126
Pfam IPR001365 EMBL-EBI Adenosine/AMP deaminase 1.0E-126
Pfam IPR001365 EMBL-EBI Adenosine/AMP deaminase 1.0E-126
Pfam IPR001365 EMBL-EBI Adenosine/AMP deaminase 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:172978_S_AT
ttggcaacgatatccaccgtaccaatgttccagatattcgtgtcagcttccgtcacgagg
ctctggttgatgagctttacaacctcttccgtgtacaaaatactctcaaacagtag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGGCAACGATATCCACCGTACCAA 657 699 73 Antisense
ACGATATCCACCGTACCAATGTTCC 194 93 79 Antisense
TCCACCGTACCAATGTTCCAGATAT 605 589 85 Antisense
GTTCCAGATATTCGTGTCAGCTTCC 444 441 99 Antisense
CCAGATATTCGTGTCAGCTTCCGTC 165 273 102 Antisense
ATATTCGTGTCAGCTTCCGTCACGA 454 17 106 Antisense
TTCCGTCACGAGGCTCTGGTTGATG 495 697 120 Antisense
CACGAGGCTCTGGTTGATGAGCTTT 340 199 126 Antisense
TGATGAGCTTTACAACCTCTTCCGT 264 567 140 Antisense
CAACCTCTTCCGTGTACAAAATACT 179 147 152 Antisense
TGTACAAAATACTCTCAAACAGTAG 394 551 164 Antisense
Sequence Source Affymetrix Proprietary Database