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[172977_at]

Description C54218_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=C54218 /DEF=C.elegans cDNA clone yk354e4 : 3prime end, single read.
Cluster 6grp_total > 03      4grp_total > 44      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 3
(-3)
A 		30
(3)
A 		12
(-1)
A 		3.7
(-2.8)
A 		27
B 6.6
(-2.8)
A 		33.7
(3)
A 		15.1
(-1)
A 		5.7
(-3)
A 		28
C 35.5
(3)
A 		8.6
(-2.1)
A 		5.5
(-2.7)
A 		3.9
(-3)
A 		32
avr 15
(0.2) 		24.1
(3) 		10.9
(-1) 		4.4
(-3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 6.6
(-1.7)
A 		6
(-1.9)
A 		21.6
(3)
A 		2.7
(-2.9)
A 		6.3
(-1.8)
A 		2.5
(-3)
A 		19
B 36.8
(2.9)
A 		17.1
(-0.5)
A 		2.4
(-3)
A 		37.6
(3)
A 		20.2
(0)
A 		9.8
(-1.7)
A 		35
C 2.6
(-2.9)
A 		26.4
(3)
A 		8.1
(-1.5)
A 		2.1
(-3)
A 		2.1
(-3)
A 		2.1
(-3)
A 		24
avr 15.3
(2.4) 		16.5
(3) 		10.7
(0) 		14.1
(1.8) 		9.5
(-0.6) 		4.8
(-3) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 1.1
(-2.4)
A 		6.5
(3)
A 		3.1
(-0.4)
A 		0.5
(-3)
A 		6
B 2.1
(-2.2)
A 		8.3
(3)
A 		3.5
(-1.1)
A 		1.2
(-3)
A 		7
C 11.8
(3)
A 		2.5
(-2)
A 		1.9
(-2.4)
A 		0.7
(-3)
A 		11
avr 5
(2) 		5.8
(3) 		2.8
(-0.6) 		0.8
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 1.2
(-2.1)
A 		2.1
(-0.8)
A 		4.7
(3)
A 		0.7
(-2.9)
A 		1.9
(-1.1)
A 		0.6
(-3)
A 		4
B 12.8
(3)
A 		5.7
(-0.5)
A 		0.6
(-3)
A 		10
(1.6)
A 		8.2
(0.7)
A 		3.7
(-1.5)
A 		12
C 1
(-2.5)
A 		8.1
(3)
A 		2.1
(-1.7)
A 		0.4
(-3)
A 		0.7
(-2.8)
A 		0.7
(-2.8)
A 		8
avr 5
(2.5) 		5.3
(3) 		2.5
(-1.7) 		3.7
(0.3) 		3.6
(0.2) 		1.7
(-3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 172977_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26513
Sequence Type Exemplar sequence
Representative Public ID C54218 NCBI
Target Description C54218_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=C54218 /DEF=C.elegans cDNA clone yk354e4 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a UniGene identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) C54218
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C54218 C54218_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=C54218 /DEF=C.elegans cDNA clone yk354e4 : 3prime end, single read. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_061039 11/11 Negative Strand Matching Probes A 
Y71A12B.12.1 11/11 Negative Strand Matching Probes A 
Y71A12B.12.2 11/11 Negative Strand Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14012798-14013725(-) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:172977_AT
gtctcgaaaatgtggctcagggagcgtgtgagcaagaattcttctcgttgtcttttccta
ttaccatcaatcgctggcccgatcaccttgaactcatcacaaataacaaacgacttgaga
cattgattagcgagttgatcaaacgtctccgggaacatcttcacattttcgaaattgact
tttgtcagaataaaacagacaccattgagcttctgatcgatgttgtaggaccacgtggcg
ttgagcttcaggagct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCTCGAAAATGTGGCTCAGGGAGC 345 471 13 Antisense
GGGAGCGTGTGAGCAAGAATTCTTC 642 493 32 Antisense
GCAAGAATTCTTCTCGTTGTCTTTT 18 321 44 Antisense
CGTTGTCTTTTCCTATTACCATCAA 385 247 58 Antisense
TCCTATTACCATCAATCGCTGGCCC 506 591 68 Antisense
CCGATCACCTTGAACTCATCACAAA 97 265 91 Antisense
GCGAGTTGATCAAACGTCTCCGGGA 702 287 142 Antisense
TCTCCGGGAACATCTTCACATTTTC 179 611 158 Antisense
GACACCATTGAGCTTCTGATCGATG 633 367 210 Antisense
GATCGATGTTGTAGGACCACGTGGC 238 415 227 Antisense
CACGTGGCGTTGAGCTTCAGGAGCT 208 199 244 Antisense
Sequence Source Affymetrix Proprietary Database