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[172975_at]

Description CEC314_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=C07314 /DEF=C.elegans cDNA clone yk136g6 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 86      6grp_high1_10_10 > 68      4grp_highest_8_8 > 21      4grp_high_8_8 > 23      6grp_highest_nonorm > 78      6grp_total > 79      4grp_total > 16      6grp_highest_sub > Da      6grp_high1_sub > Cu      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2909
1 2 3 4 range
A 1480
(-3)
P 		1490.3
(-3)
P 		2854
(0.6)
P 		3782.5
(3)
P 		2303
B 1522.5
(-3)
P 		1972.3
(-1.7)
P 		2571.8
(0.1)
P 		3553.7
(3)
P 		2031
C 1456.7
(-3)
P 		2357.8
(-1.1)
P 		2589.4
(-0.7)
P 		4365.5
(3)
P 		2909
avr 1486.4
(-3) 		1940.1
(-1.9) 		2671.7
(-0.1) 		3900.6
(3) 		2414

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1234
1 2 3 4 5 6 range
A 1360
(-1.9)
P 		1411.8
(-1.5)
P 		1693.2
(0.9)
P 		1237
(-3)
P 		1588
(0)
P 		1936.6
(3)
P 		700
B 1471.1
(-1.3)
P 		1520.2
(-1)
P 		1194.2
(-3)
P 		1449.9
(-1.4)
P 		1426
(-1.5)
P 		2149.4
(3)
P 		955
C 1359.3
(0.8)
P 		1510.9
(2.1)
P 		1473.8
(1.8)
P 		915.5
(-3)
P 		1473.1
(1.8)
P 		1614.2
(3)
P 		699
avr 1396.8
(-1.3) 		1481
(-0.6) 		1453.7
(-0.8) 		1200.8
(-3) 		1495.7
(-0.5) 		1900.1
(3) 		699
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 579
1 2 3 4 range
A 538.9
(0.1)
P 		323.5
(-3)
P 		746.1
(3)
P 		553.7
(0.3)
P 		423
B 485.5
(-3)
P 		487.1
(-3)
P 		595.9
(-0.6)
P 		757.3
(3)
P 		272
C 482.2
(-3)
P 		677.9
(-0.2)
P 		902.5
(3)
P 		736.1
(0.6)
P 		420
avr 502.2
(-2.9) 		496.2
(-3) 		748.2
(3) 		682.4
(1.4) 		252

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 617
1 2 3 4 5 6 range
A 250.7
(-3)
P 		502.1
(3)
P 		368.7
(-0.2)
P 		313.7
(-1.5)
P 		479.2
(2.5)
P 		471.5
(2.3)
P 		251
B 511.9
(-0.4)
P 		506
(-0.5)
P 		290
(-3)
P 		384
(-1.9)
P 		579.4
(0.4)
P 		801.5
(3)
P 		512
C 503.8
(2.4)
P 		461
(1.7)
P 		375.1
(0.2)
P 		184.1
(-3)
P 		476.7
(1.9)
P 		540.4
(3)
P 		356
avr 422.1
(-0.5) 		489.7
(0.8) 		344.6
(-2) 		293.9
(-3) 		511.8
(1.2) 		604.5
(3) 		311
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 172975_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27138
Sequence Type Exemplar sequence
Representative Public ID CEC314 NCBI
Target Description CEC314_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=C07314 /DEF=C.elegans cDNA clone yk136g6 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027557
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
R151.2d.2 ENSEMBL cdna:known chromosome:CEL140:III:7209891:7215035:1 gene:R151.2 None
R151.2d.1 ENSEMBL cdna:known chromosome:CEL140:III:7209997:7215197:1 gene:R151.2 None
NM_001027557 NCBI Caenorhabditis elegans R151.2d (R151.2) mRNA, complete cds. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7214774-7214959(+) 61.33 61.33
Public Domain and Genome References
Ensembl R151.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAT92064 Hypothetical protein R151.2d [Caenorhabditis elegans] ref|NP_001022728.1| R151.2d [Caenorhabditis elegans] 0.0
blast AAK29853 Hypothetical protein R151.2a [Caenorhabditis elegans] ref|NP_498586.1| R151.2a [Caenorhabditis elegans] 0.0
blast CAE70156 Hypothetical protein CBG16623 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000836 EMBL-EBI Phosphoribosyltransferase 1.8E-39
Sequence
Target Sequence 
>C. ELEGANS:172975_AT
agaatcgcttcaggtgacttgttgtagttgcgtgatganttctcttttcagttttccatt
cgtatttccactatttgaacatttgtcctctttgctctgttaccattcgattctgctcat
tttctcttcctnaaatgtcttcaaattgcattcaactgt

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAATCGCTTCAGGTGACTTGTTGT 654 75 123 Antisense
GCTTCAGGTGACTTGTTGTAGTTGC 496 305 129 Antisense
GGTGACTTGTTGTAGTTGCGTGATG 365 499 135 Antisense
TTCTCTTTTCAGTTTTCCATTCGTA 264 693 162 Antisense
TTCAGTTTTCCATTCGTATTTCCAC 452 687 169 Antisense
TTTCCATTCGTATTTCCACTATTTG 682 669 175 Antisense
ATTCGTATTTCCACTATTTGAACAT 589 9 180 Antisense
ATTTGAACATTTGTCCTCTTTGCTC 551 17 195 Antisense
TCTGTTACCATTCGATTCTGCTCAT 216 609 218 Antisense
TACCATTCGATTCTGCTCATTTTCT 598 649 223 Antisense
ATGTCTTCAAATTGCATTCAACTGT 236 47 257 Antisense
Sequence Source Affymetrix Proprietary Database