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[172974_s_at]

Description C38193_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=C38193 /DEF=C.elegans cDNA clone yk489c2 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 13      6grp_high1_10_10 > 31      4grp_highest_8_8 > 25      4grp_high_8_8 > 60      6grp_highest_nonorm > 24      6grp_total > 33      4grp_total > 60      6grp_high1_sub > 03      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3148
1 2 3 4 range
A 4024.2
(0.7)
P 		3627.6
(-0.3)
P 		4890.1
(3)
P 		2585.3
(-3)
P 		2305
B 4164.5
(2.9)
P 		4204.1
(3)
P 		4172.7
(2.9)
P 		1742.6
(-3)
P 		2462
C 3738.7
(1.7)
P 		4210.4
(3)
P 		4151.2
(2.8)
P 		2077.1
(-3)
P 		2133
avr 3975.8
(1.9) 		4014
(2) 		4404.7
(3) 		2135
(-3) 		2270

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2829
1 2 3 4 5 6 range
A 3608.1
(2.4)
P 		3815.1
(3)
P 		3431.7
(1.9)
P 		3282
(1.4)
P 		2112.1
(-2)
P 		1770.2
(-3)
P 		2045
B 2737.7
(-0.5)
P 		3331.7
(0.8)
P 		4378.4
(3)
P 		2253.7
(-1.5)
P 		2325
(-1.4)
P 		1549.5
(-3)
P 		2829
C 4006.7
(3)
P 		2746.3
(-0.1)
P 		3957
(2.9)
P 		1582.4
(-3)
P 		2716.3
(-0.2)
P 		1878.7
(-2.3)
P 		2424
avr 3450.8
(1.7) 		3297.7
(1.3) 		3922.4
(3) 		2372.7
(-1.2) 		2384.5
(-1.2) 		1732.8
(-3) 		2190
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1115
1 2 3 4 range
A 1465.2
(3)
P 		787.5
(-0.7)
P 		1278.4
(2)
P 		378.4
(-3)
P 		1087
B 1328
(3)
P 		1038.3
(1.2)
P 		966.9
(0.7)
P 		371.3
(-3)
P 		957
C 1237.6
(1.9)
P 		1210.5
(1.7)
P 		1446.8
(3)
P 		350.2
(-3)
P 		1097
avr 1343.6
(3) 		1012.1
(1) 		1230.7
(2.3) 		366.6
(-3) 		977

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1167
1 2 3 4 5 6 range
A 665.1
(-1.5)
P 		1356.8
(3)
P 		747.4
(-0.9)
P 		832.4
(-0.4)
P 		637.3
(-1.7)
P 		431
(-3)
P 		926
B 952.6
(1.2)
P 		1109
(3)
P 		1063.2
(2.5)
P 		596.9
(-2.8)
P 		944.6
(1.1)
P 		577.8
(-3)
P 		531
C 1485.1
(3)
P 		838
(-0.3)
P 		1007.1
(0.5)
P 		318.2
(-3)
P 		879
(-0.1)
P 		628.9
(-1.4)
P 		1167
avr 1034.3
(2.3) 		1101.3
(3) 		939.2
(1.2) 		582.5
(-2.6) 		820.3
(-0) 		545.9
(-3) 		555
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172974_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26414
Sequence Type Exemplar sequence
Representative Public ID C38193 NCBI
Target Description C38193_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=C38193 /DEF=C.elegans cDNA clone yk489c2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068196(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068196 NCBI Caenorhabditis elegans F19C7.1 (F19C7.1) mRNA, complete cds. 11/11 A 
SNAP00000030499 ENSEMBL cdna:SNAP chromosome:CEL140:IV:4603098:4608081:1 11/11 None
GENEFINDER00000030504 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4605881:4608201:1 11/11 None
F19C7.1 ENSEMBL cdna:known chromosome:CEL140:IV:4605794:4608182:1 gene:F19C7.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4607474-4608144(+) 65.33 78.33
Public Domain and Genome References
Gene Title
Ensembl F19C7.1
Entrez Gene 177224 Entrez gene
SwissProt Q19591 EMBL-EBI
WormBase CE04415 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA83509 Hypothetical protein F19C7.4 [Caenorhabditis elegans] ref|NP_500596.2| F19C7.4 [Caenorhabditis elegans] 0.0
blast AAA83508 Hypothetical protein F19C7.2 [Caenorhabditis elegans] ref|NP_500595.1| F19C7.2 [Caenorhabditis elegans] 0.0
blast CAE58551 Hypothetical protein CBG01710 [Caenorhabditis briggsae] 0.0
blast AAA83510 Hypothetical protein F19C7.1 [Caenorhabditis elegans] ref|NP_500597.1| F19C7.1 [Caenorhabditis elegans] 1.0E-159
blast CAE58552 Hypothetical protein CBG01711 [Caenorhabditis briggsae] 1.0E-132
blast CAB05250 Hypothetical protein LLC1.2 [Caenorhabditis elegans] ref|NP_502752.1| LLC1.2 [Caenorhabditis elegans] 8.0E-12
Protein Domains
Database ID Description E-Value
Pfam IPR009673 EMBL-EBI Protein of unknown function DUF1261 6.3E-64
Pfam IPR009673 EMBL-EBI Protein of unknown function DUF1261 6.3E-64
Pfam IPR008758 EMBL-EBI Peptidase S28 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:172974_S_AT
tctccaacttccaacgaggctgtgaccagattcaacactgaaaccggaaaggttgaatat
gagactctccntacntaccaaatcgtcgacaataaggccgtcgtcctgaatgaggcctcc
tggatttccga

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTCCAACTTCCAACGAGGCTGTGA 503 609 121 Antisense
CCAACTTCCAACGAGGCTGTGACCA 169 277 124 Antisense
ACTTCCAACGAGGCTGTGACCAGAT 508 103 127 Antisense
GAGGCTGTGACCAGATTCAACACTG 34 407 136 Antisense
GACCAGATTCAACACTGAAACCGGA 556 383 144 Antisense
GATTCAACACTGAAACCGGAAAGGT 183 423 149 Antisense
GGAAAGGTTGAATATGAGACTCTCC 589 525 166 Antisense
ACCAAATCGTCGACAATAAGGCCGT 379 83 197 Antisense
GACAATAAGGCCGTCGTCCTGAATG 123 363 208 Antisense
AGGCCGTCGTCCTGAATGAGGCCTC 104 53 215 Antisense
TGAATGAGGCCTCCTGGATTTCCGA 546 573 227 Antisense
Sequence Source Affymetrix Proprietary Database