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[172972_s_at]

Description C59292_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=C59292 /DEF=C.elegans cDNA clone yk411a1 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 69      6grp_high1_10_10 > 95      4grp_highest_8_8 > 20      4grp_high_8_8 > 31      6grp_highest_nonorm > 83      6grp_total > 86      4grp_total > 32      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 314
1 2 3 4 range
A 497.4
(-3)
P 		561
(-1.8)
P 		811.1
(3)
P 		648.6
(-0.1)
P 		314
B 515.5
(-3)
P 		582.5
(-1.1)
P 		726.5
(3)
P 		679.2
(1.7)
P 		211
C 518.6
(-3)
P 		602.7
(-1)
P 		766
(3)
P 		735.6
(2.3)
P 		247
avr 510.5
(-3) 		582.1
(-1.3) 		767.9
(3) 		687.8
(1.1) 		257

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 417
1 2 3 4 5 6 range
A 301.5
(-3)
P 		379.8
(-1.3)
P 		479.8
(0.9)
P 		578.5
(3)
P 		383
(-1.2)
P 		530.8
(2)
P 		277
B 368.4
(-3)
P 		366.8
(-3)
P 		401.5
(-2)
P 		483
(0.3)
P 		560.3
(2.5)
P 		579.5
(3)
P 		213
C 386.4
(-2.6)
P 		401.5
(-2.4)
P 		514.6
(-0.5)
P 		365.8
(-3)
P 		578.3
(0.6)
P 		718.3
(3)
P 		353
avr 352.1
(-3) 		382.7
(-2.3) 		465.3
(-0.4) 		475.8
(-0.1) 		507.2
(0.6) 		609.5
(3) 		257
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 172
1 2 3 4 range
A 181.1
(1.4)
P 		121.8
(-1.6)
P 		212
(3)
P 		94.9
(-3)
P 		117
B 164.4
(2)
P 		143.9
(-3)
P 		168.3
(3)
P 		144.7
(-2.8)
P 		24
C 171.7
(-1)
P 		173.3
(-0.9)
P 		267
(3)
P 		124
(-3)
P 		143
avr 172.4
(0.2) 		146.3
(-1.4) 		215.8
(3) 		121.2
(-3) 		95

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 185
1 2 3 4 5 6 range
A 55.6
(-3)
P 		135.1
(2.2)
P 		104.5
(0.2)
P 		146.7
(3)
P 		115.6
(1)
P 		129.2
(1.8)
P 		91
B 128.2
(-1.6)
P 		122.1
(-1.9)
P 		97.5
(-3)
P 		127.9
(-1.6)
P 		227.7
(3)
P 		216.1
(2.5)
P 		130
C 143.2
(-0.5)
P 		122.5
(-1.2)
P 		131
(-0.9)
P 		73.6
(-3)
P 		187.1
(1.1)
P 		240.5
(3)
P 		167
avr 109
(-3) 		126.6
(-1.8) 		111
(-2.9) 		116.1
(-2.5) 		176.8
(1.7) 		195.3
(3) 		86
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172972_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26629
Sequence Type Exemplar sequence
Representative Public ID C59292 NCBI
Target Description C59292_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=C59292 /DEF=C.elegans cDNA clone yk411a1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171241(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171241 NCBI Caenorhabditis elegans Y38C1AA.11 (Y38C1AA.11) mRNA, complete cds. 11/11 A 
SNAP00000038652 ENSEMBL cdna:SNAP chromosome:CEL140:IV:218567:220725:1 10/11 None
GENEFINDER00000038663 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:218567:220769:1 11/11 None
Y38C1AA.11 ENSEMBL cdna:known chromosome:CEL140:IV:218551:220799:1 gene:Y38C1AA.11 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000043296 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:219782-220782(+) 99.0 99.0
Public Domain and Genome References
Gene Title
Ensembl Y38C1AA.11
Entrez Gene 176837 Entrez gene
SwissProt Q8MXT1 EMBL-EBI
WormBase CE31640 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:260716_AT peroxiredoxin (PER1) / rehydrin, putative at
ATGENOME1:20375_AT peroxiredoxin (PER1) / rehydrin, putative at
CANINE:1594844_S_AT similar to Peroxiredoxin 6 (Antioxidant protein 2) (1-Cys peroxiredoxin) (1-Cys PRX) (Acidic calcium-independent phospholipase A2) (aiPLA2) (Non-selenium glutathione peroxidase) (NSGPx) (24 kDa protein) (Liver 2D page spot 40) (Red blood cells page... cfa
CANINE:1589281_S_AT similar to Peroxiredoxin 6 (Antioxidant protein 2) (1-Cys peroxiredoxin) (1-Cys PRX) (Acidic calcium-independent phospholipase A2) (aiPLA2) (Non-selenium glutathione peroxidase) (NSGPx) (24 kDa protein) (Liver 2D page spot 40) (Red blood cells page... cfa
CANINE_2:CFA.3121.4.S1_AT similar to Peroxiredoxin 6 (Antioxidant protein 2) (1-Cys peroxiredoxin) (1-Cys PRX) (Acidic calcium-independent phospholipase A2) (aiPLA2) (Non-selenium glutathione peroxidase) (NSGPx) (24 kDa protein) (Liver 2D page spot 40) (Red blood cells page... cfa
CANINE_2:CFA.3121.4.S1_S_AT similar to Peroxiredoxin 6 (Antioxidant protein 2) (1-Cys peroxiredoxin) (1-Cys PRX) (Acidic calcium-independent phospholipase A2) (aiPLA2) (Non-selenium glutathione peroxidase) (NSGPx) (24 kDa protein) (Liver 2D page spot 40) (Red blood cells page... cfa
DROSOPHILA_2:1634107_AT Peroxiredoxin 6005 dm
DROSGENOME1:153181_AT Peroxiredoxin 6005 dm
HG-U95AV2:39354_AT peroxiredoxin 6 hs
HG-U133_PLUS_2:200844_S_AT peroxiredoxin 6 hs
HG-U133A_2:200844_S_AT peroxiredoxin 6 hs
HG-U133A:200844_S_AT peroxiredoxin 6 hs
HG-U133_PLUS_2:200845_S_AT peroxiredoxin 6 hs
HG-U133A:200845_S_AT peroxiredoxin 6 hs
HG-FOCUS:200845_S_AT peroxiredoxin 6 hs
HG-U133A_2:200845_S_AT peroxiredoxin 6 hs
HUGENEFL:D14662_AT peroxiredoxin 6 hs
U133_X3P:G4758637_3P_A_AT peroxiredoxin 6 hs
U133_X3P:HS.120.0.A1_3P_A_AT peroxiredoxin 6 hs
HG-U95E:80394_AT peroxiredoxin 6 hs
HG-U133_PLUS_2:238951_AT Peroxiredoxin 6 hs
HG-U133B:238951_AT Peroxiredoxin 6 hs
HG-U133_PLUS_2:242751_AT Peroxiredoxin 6 hs
HG-U133B:242751_AT Peroxiredoxin 6 hs
HG-U95B:46353_R_AT Peroxiredoxin 6 hs
HG-U95E:88317_AT Peroxiredoxin 6 hs
HU35KSUBB:RC_N55072_AT Peroxiredoxin 6 hs
U133_X3P:242751_3P_AT Peroxiredoxin 6 hs
U133_X3P:HS.38038.1.A1_3P_A_AT Peroxiredoxin 6 hs
U133_X3P:HS.38038.1.A1_3P_AT Peroxiredoxin 6 hs
MOE430A:1423223_A_AT peroxiredoxin 6 mm
MOUSE430A_2:1423223_A_AT peroxiredoxin 6 mm
MOUSE430_2:1423223_A_AT peroxiredoxin 6 mm
MU11KSUBA:AF004670_S_AT peroxiredoxin 6 mm
MG-U74AV2:100622_AT peroxiredoxin 6 mm
MG-U74AV2:100332_S_AT peroxiredoxin 6 mm
MG-U74CV2:168447_R_AT peroxiredoxin 6 mm
MOE430B:1442878_AT peroxiredoxin 6 mm
MOUSE430_2:1442878_AT peroxiredoxin 6 mm
MU19KSUBB:TC33684_AT Peroxiredoxin 6, mRNA (cDNA clone MGC:19131 IMAGE:4215591) mm
MU19KSUBB:TC33684_G_AT Peroxiredoxin 6, mRNA (cDNA clone MGC:19131 IMAGE:4215591) mm
RT-U34:RC_AA892041_AT peroxiredoxin 6 rn
RG-U34A:RC_AA892041_AT peroxiredoxin 6 rn
RG-U34A:Y17295CDS_S_AT peroxiredoxin 6 rn
RG-U34A:AF014009_AT peroxiredoxin 6 rn
RAE230A:1367969_AT peroxiredoxin 6 rn
RAT230_2:1367969_AT peroxiredoxin 6 rn
RAE230B:1394574_AT Peroxiredoxin 6 rn
RAT230_2:1394574_AT Peroxiredoxin 6 rn
YEAST_2:1775303_AT Mitochondrial peroxiredoxin (1-Cys Prx) with thioredoxin peroxidase activity, has a role in reduction of hydroperoxides; induced during respiratory growth and under conditions of oxidative stress Sc
Protein Similarities
Method ID Description E-Value
blast AAM97968 Hypothetical protein Y38C1AA.11 [Caenorhabditis elegans] ref|NP_741287.1| Y38C1AA.11 [Caenorhabditis elegans] 1.0E-132
blast AAM97968 Hypothetical protein Y38C1AA.11 [Caenorhabditis elegans] ref|NP_741287.1| Y38C1AA.11 [Caenorhabditis elegans] 1.0E-124
blast CAE58513 Hypothetical protein CBG01664 [Caenorhabditis briggsae] 1.0E-114
blast CAE58513 Hypothetical protein CBG01664 [Caenorhabditis briggsae] 1.0E-107
blast AAF21097 thioredoxin peroxidase [Dirofilaria immitis] 3.0E-54
Protein Domains
Database ID Description E-Value
Pfam IPR000866 EMBL-EBI Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen 1.9E-44
Sequence
Target Sequence 
>C. ELEGANS:172972_S_AT
aattctccgcatggtcgacggtgttcaactcggcacaaaggctccagtggcaactccggc
taactggattgccggtgacaatgtcatcgctcaaccatctctgagtcaagagagagttat
tcaggagctttgtggtggagatccagacaaatgcaagacggttccgttgccgagtggaaa
gagttatctacgtgtcatcgaggga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTCTCCGCATGGTCGACGGTGTT 454 177 74 Antisense
CATGGTCGACGGTGTTCAACTCGGC 398 209 83 Antisense
TCAACTCGGCACAAAGGCTCCAGTG 129 631 98 Antisense
TCCAGTGGCAACTCCGGCTAACTGG 106 585 116 Antisense
GGCTAACTGGATTGCCGGTGACAAT 202 539 131 Antisense
CGGTGACAATGTCATCGCTCAACCA 644 243 146 Antisense
ATCGCTCAACCATCTCTGAGTCAAG 107 37 159 Antisense
GAGTTATTCAGGAGCTTTGTGGTGG 365 389 187 Antisense
GTGGAGATCCAGACAAATGCAAGAC 608 489 208 Antisense
ATGCAAGACGGTTCCGTTGCCGAGT 317 43 224 Antisense
GAGTTATCTACGTGTCATCGAGGGA 691 397 254 Antisense
Sequence Source Affymetrix Proprietary Database