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[172969_x_at]

Description T05A7.9_rc /REP_DB=WormBase Gene ID /WP=CE04895 /GB=AAK68882.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /REVCOMP /DEF=small histidine-alanine-rich protein precursor (SHARP)
Cluster 4grp_high_8_8 > 05      6grp_total > 10      4grp_total > 03      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4946
1 2 3 4 range
A 757.1
(-2.3)
P 		256.2
(-3)
P 		266.8
(-3)
P 		4525
(3)
P 		4269
B 1159.3
(-0.2)
P 		274
(-2.8)
A 		222.2
(-3)
A 		2234.7
(3)
P 		2013
C 793.9
(-2.2)
P 		179.9
(-3)
A 		173.1
(-3)
P 		5119.2
(3)
P 		4946
avr 903.4
(-1.9) 		236.7
(-3) 		220.7
(-3) 		3959.6
(3) 		3739

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1826
1 2 3 4 5 6 range
A 479
(-1.9)
A 		322
(-2.5)
P 		1881.4
(3)
P 		170.6
(-3)
P 		632.8
(-1.4)
P 		364.7
(-2.3)
A 		1711
B 662.1
(2.5)
P 		690.8
(3)
P 		387.4
(-2.4)
A 		421.4
(-1.8)
P 		351.8
(-3)
P 		507.7
(-0.2)
A 		339
C 212.6
(-2.7)
P 		1948.6
(3)
P 		285.7
(-2.5)
P 		435.3
(-2)
P 		122.2
(-3)
P 		688
(-1.1)
A 		1826
avr 451.2
(-2) 		987.1
(3) 		851.5
(1.7) 		342.4
(-3) 		368.9
(-2.8) 		520.1
(-1.3) 		645
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 812
1 2 3 4 range
A 275.7
(-0.8)
P 		55.6
(-3)
P 		69.7
(-2.9)
P 		662.4
(3)
P 		607
B 369.7
(1.5)
P 		67.7
(-2.8)
A 		51.5
(-3)
A 		476.2
(3)
P 		425
C 262.8
(-1.4)
P 		51.7
(-3)
A 		60.3
(-2.9)
P 		863.2
(3)
P 		812
avr 302.7
(-0.6) 		58.3
(-3) 		60.5
(-3) 		667.3
(3) 		609

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 555
1 2 3 4 5 6 range
A 88.3
(-2.3)
A 		114.5
(-1.8)
P 		409.7
(3)
P 		43.3
(-3)
P 		190.9
(-0.6)
P 		88.8
(-2.3)
A 		366
B 230.4
(3)
P 		229.9
(3)
P 		94.1
(-3)
A 		111.6
(-2.2)
P 		142.9
(-0.9)
P 		189.3
(1.2)
A 		136
C 78.8
(-2.6)
P 		594.6
(3)
P 		72.7
(-2.6)
P 		87.5
(-2.5)
P 		39.5
(-3)
P 		230.3
(-0.9)
A 		555
avr 132.5
(-1.7) 		313
(3) 		192.2
(-0.1) 		80.8
(-3) 		124.4
(-1.9) 		169.5
(-0.7) 		232
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172969_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28116
Sequence Type Exemplar sequence
Representative Public ID T05A7.9 NCBI
Target Description T05A7.9_rc /REP_DB=WormBase Gene ID /WP=CE04895 /GB=AAK68882.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /REVCOMP /DEF=small histidine-alanine-rich protein precursor (SHARP)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) T05A7.9
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
T05A7.9 T05A7.9_rc /REP_DB=WormBase Gene ID /WP=CE04895 /GB=AAK68882.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /REVCOMP /DEF=small histidine-alanine-rich protein precursor (SHARP) A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_070640 1/11 Cross Hyb Matching Probes A 
NM_077120 1/11 Cross Hyb Matching Probes A 
NM_061393 1/11 Cross Hyb Matching Probes A 
GENEFINDER00000015491 1/11 Cross Hyb Matching Probes None
GENEFINDER00000042962 1/11 Cross Hyb Matching Probes None
GENEFINDER00000022380 2/11 Cross Hyb Matching Probes None
GENEFINDER00000038830 1/11 Cross Hyb Matching Probes None
GENEFINDER00000003373 1/11 Cross Hyb Matching Probes None
GENEFINDER00000014744 1/11 Cross Hyb Matching Probes None
GENEFINDER00000029295 1/11 Cross Hyb Matching Probes None
GENEFINDER00000043146 2/11 Cross Hyb Matching Probes None
GENEFINDER00000043152 1/11 Cross Hyb Matching Probes None
GENEFINDER00000034929 1/11 Cross Hyb Matching Probes None
GENEFINDER00000004189 1/11 Cross Hyb Matching Probes None
GENEFINDER00000018437 1/11 Cross Hyb Matching Probes None
GENEFINDER00000030461 1/11 Cross Hyb Matching Probes None
GENEFINDER00000004836 1/11 Cross Hyb Matching Probes None
GENEFINDER00000014734 1/11 Cross Hyb Matching Probes None
GENEFINDER00000016904 1/11 Cross Hyb Matching Probes None
GENEFINDER00000035347 1/11 Cross Hyb Matching Probes None
GENEFINDER00000006585 2/11 Cross Hyb Matching Probes None
T02H6.3 1/11 Cross Hyb Matching Probes A 
Y116A8C.41 1/11 Cross Hyb Matching Probes A 
C24A3.1 1/11 Cross Hyb Matching Probes A 
NM_062430 11/11 Negative Strand Matching Probes A 
SNAP00000005190 9/11 Negative Strand Matching Probes None
GENEFINDER00000005214 11/11 Negative Strand Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Public Domain and Genome References
Ensembl T05A7.9
Sequence
Target Sequence 
>C. ELEGANS:172969_X_AT
tggcgggaattcaaattttctgtgaaaaatttcggcgggaaattcaaattttctgagaaa
aatttttggcgggaaattaaaattttcttagaaataatttttgccgggaaattggtgaga
cccttcgtggtgagacccttcgtggtgagacccatcgttgtgagacccttcgtggtgaga
cccttagtggtgagacccatcgttgtgagacctttcgtggtgagacccttcgtggtgaga
cccatcgttgcgagacccagtgtggtgagacccttcgtggtgagacccttcgtggtgaga
cccatcgttgtgagacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGCGGGAATTCAAATTTTCTGTGA 355 543 35 Antisense
TTGGTGAGACCCTTCGTGGTGAGAC 348 701 146 Antisense
GTGGTGAGACCCATCGTTGTGAGAC 312 489 176 Antisense
GTTGTGAGACCCTTCGTGGTGAGAC 702 435 191 Antisense
GGTGAGACCCTTAGTGGTGAGACCC 369 501 208 Antisense
GGTGAGACCCATCGTTGTGAGACCT 370 501 223 Antisense
TGTGAGACCTTTCGTGGTGAGACCC 103 555 238 Antisense
ATCGTTGCGAGACCCAGTGTGGTGA 461 35 278 Antisense
CGAGACCCAGTGTGGTGAGACCCTT 24 239 285 Antisense
TGGTGAGACCCTTCGTGGTGAGACC 538 551 312 Antisense
TGGTGAGACCCATCGTTGTGAGACC 546 551 327 Antisense
Sequence Source Affymetrix Proprietary Database