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[172968_x_at] transposase

Description Y45F10C.5 /REP_DB=WormBase Gene ID /WP=CE16639 /TR=O45942 /GB=CAB16476.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=HYPOTHETICAL 29.3 KD PROTEIN B0280.6 IN CHROMOSOME III
Cluster 6grp_highest_10_10 > 44      6grp_high1_10_10 > 43      4grp_highest_8_8 > 23      4grp_high_8_8 > 13      6grp_highest_nonorm > 81      6grp_total > 11      4grp_total > 03      6grp_highest_sub > 02      6grp_high1_sub > 02      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 809
1 2 3 4 range
A 202.1
(-2.8)
P 		194.6
(-2.9)
P 		185.9
(-3)
P 		593.3
(3)
P 		407
B 247.6
(-3)
P 		295.3
(-0.8)
P 		271.4
(-1.9)
P 		377.3
(3)
P 		130
C 346.8
(-1.8)
P 		240
(-2.6)
P 		188.8
(-3)
P 		995.2
(3)
P 		806
avr 265.5
(-2.3) 		243.3
(-2.6) 		215.4
(-3) 		655.3
(3) 		440

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 319
1 2 3 4 5 6 range
A 288
(-0.2)
P 		276.6
(-0.5)
P 		425.8
(3)
P 		169.6
(-3)
P 		296.7
(-0)
P 		227.2
(-1.7)
P 		256
B 246
(-2)
P 		399
(3)
P 		293.5
(-0.5)
P 		216.9
(-3)
P 		266.8
(-1.4)
P 		228.5
(-2.6)
P 		182
C 188.1
(-3)
P 		488.4
(3)
P 		219
(-2.4)
P 		251.9
(-1.7)
P 		207.1
(-2.6)
P 		233.8
(-2.1)
P 		300
avr 240.7
(-2) 		388
(3) 		312.8
(0.4) 		212.8
(-3) 		256.9
(-1.5) 		229.8
(-2.4) 		175
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 126
1 2 3 4 range
A 73.6
(1.2)
P 		42.3
(-3)
P 		48.6
(-2.2)
P 		86.8
(3)
P 		45
B 78.9
(2.5)
P 		72.9
(0.4)
P 		62.9
(-3)
P 		80.4
(3)
P 		18
C 114.8
(-0.1)
P 		69
(-2.8)
P 		65.8
(-3)
P 		167.8
(3)
P 		102
avr 89.1
(0.4) 		61.4
(-2.7) 		59.1
(-3) 		111.7
(3) 		53

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 106
1 2 3 4 5 6 range
A 53.1
(-1.9)
P 		98.4
(3)
P 		92.7
(2.4)
P 		43
(-3)
P 		89.5
(2)
P 		55.3
(-1.7)
P 		55
B 85.6
(-0.8)
P 		132.8
(3)
P 		71.3
(-1.9)
P 		57.4
(-3)
P 		108.4
(1.1)
P 		85.2
(-0.8)
P 		75
C 69.7
(-1.8)
P 		149
(3)
P 		55.7
(-2.7)
P 		50.7
(-3)
P 		67
(-2)
P 		78.3
(-1.3)
P 		98
avr 69.5
(-1.5) 		126.7
(3) 		73.2
(-1.2) 		50.4
(-3) 		88.3
(-0) 		72.9
(-1.2) 		76
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172968_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9115
Sequence Type Exemplar sequence
Representative Public ID Y45F10C.5 NCBI
Target Description Y45F10C.5 /REP_DB=WormBase Gene ID /WP=CE16639 /TR=O45942 /GB=CAB16476.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=HYPOTHETICAL 29.3 KD PROTEIN B0280.6 IN CHROMOSOME III
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064895(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064895 NCBI Caenorhabditis elegans T12B5.6 (transposase) mRNA, complete cds. 9/11 A 
GENEFINDER00000029398 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:13218704:13227206:-1 9/11 None
SNAP00000029389 ENSEMBL cdna:SNAP chromosome:CEL140:I:13220498:13221517:-1 9/11 None
SNAP00000036928 ENSEMBL cdna:SNAP chromosome:CEL140:I:8380875:8381894:1 9/11 None
GENEFINDER00000036932 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:8380875:8385660:1 9/11 None
SNAP00000034259 ENSEMBL cdna:SNAP chromosome:CEL140:I:930448:932863:1 10/11 None
GENEFINDER00000034284 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:931844:932863:1 10/11 None
SNAP00000015957 ENSEMBL cdna:SNAP chromosome:CEL140:I:4752174:4753193:1 9/11 None
GENEFINDER00000015966 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:4752174:4759485:1 9/11 None
SNAP00000031034 ENSEMBL cdna:SNAP chromosome:CEL140:I:12409672:12410691:-1 9/11 None
GENEFINDER00000031058 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12409692:12412610:-1 9/11 None
SNAP00000001110 ENSEMBL cdna:SNAP chromosome:CEL140:II:11229658:11236287:1 10/11 None
GENEFINDER00000001126 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:11226585:11232690:1 10/11 None
SNAP00000029284 ENSEMBL cdna:SNAP chromosome:CEL140:II:1031767:1032786:-1 9/11 None
GENEFINDER00000029301 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1031767:1032786:-1 9/11 None
SNAP00000032334 ENSEMBL cdna:SNAP chromosome:CEL140:II:3601727:3602746:-1 10/11 None
GENEFINDER00000032337 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3599556:3602746:-1 10/11 None
SNAP00000034941 ENSEMBL cdna:SNAP chromosome:CEL140:II:4927000:4928019:1 9/11 None
GENEFINDER00000034963 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:4927000:4928966:1 9/11 None
SNAP00000037185 ENSEMBL cdna:SNAP chromosome:CEL140:II:10904545:10905564:1 10/11 None
GENEFINDER00000037194 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:10904545:10905808:1 10/11 None
SNAP00000043072 ENSEMBL cdna:SNAP chromosome:CEL140:II:15172013:15173032:1 9/11 None
GENEFINDER00000043127 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:15172013:15173032:1 9/11 None
SNAP00000010962 ENSEMBL cdna:SNAP chromosome:CEL140:III:1122980:1123972:-1 10/11 None
GENEFINDER00000010967 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:1122980:1123972:-1 10/11 None
SNAP00000028398 ENSEMBL cdna:SNAP chromosome:CEL140:III:3858283:3862935:-1 9/11 None
GENEFINDER00000028402 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:3858283:3862935:-1 9/11 None
GENEFINDER00000007710 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:933696:936054:-1 9/11 None
SNAP00000007696 ENSEMBL cdna:SNAP chromosome:CEL140:III:934052:935554:-1 9/11 None
SNAP00000006144 ENSEMBL cdna:SNAP chromosome:CEL140:III:12492981:12519375:-1 9/11 None
GENEFINDER00000006277 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:12518356:12519375:-1 9/11 None
GENEFINDER00000014151 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:1292041:1294464:-1 10/11 None
SNAP00000014144 ENSEMBL cdna:SNAP chromosome:CEL140:III:1293445:1294464:-1 10/11 None
SNAP00000034656 ENSEMBL cdna:SNAP chromosome:CEL140:III:6575877:6576896:1 9/11 None
GENEFINDER00000034662 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:6575877:6577207:1 9/11 None
SNAP00000016400 ENSEMBL cdna:SNAP chromosome:CEL140:III:4297456:4301214:-1 9/11 None
GENEFINDER00000016409 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:4297456:4299152:-1 9/11 None
SNAP00000000183 ENSEMBL cdna:SNAP chromosome:CEL140:IV:16575108:16576900:-1 9/11 None
GENEFINDER00000000219 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:16575108:16578475:-1 9/11 None
SNAP00000002873 ENSEMBL cdna:SNAP chromosome:CEL140:IV:11869583:11870602:1 9/11 None
GENEFINDER00000002886 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:11869583:11875613:1 9/11 None
SNAP00000004220 ENSEMBL cdna:SNAP chromosome:CEL140:IV:14012427:14013446:-1 9/11 None
GENEFINDER00000004233 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:14012173:14013446:-1 9/11 None
SNAP00000006183 ENSEMBL cdna:SNAP chromosome:CEL140:IV:9412660:9413679:-1 9/11 None
GENEFINDER00000006188 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:9410246:9413679:-1 9/11 None
SNAP00000009025 ENSEMBL cdna:SNAP chromosome:CEL140:IV:9502850:9503869:1 10/11 None
GENEFINDER00000009034 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:9502850:9503869:1 10/11 None
SNAP00000010754 ENSEMBL cdna:SNAP chromosome:CEL140:IV:14256383:14257402:1 9/11 None
GENEFINDER00000010759 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:14256383:14264378:1 9/11 None
SNAP00000018406 ENSEMBL cdna:SNAP chromosome:CEL140:IV:16008023:16009042:1 9/11 None
GENEFINDER00000018438 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:16008023:16009042:1 9/11 None
SNAP00000019475 ENSEMBL cdna:SNAP chromosome:CEL140:IV:11238920:11239939:-1 9/11 None
SNAP00000020442 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7524483:7525502:1 9/11 None
GENEFINDER00000020447 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7524483:7534052:1 9/11 None
SNAP00000026156 ENSEMBL cdna:SNAP chromosome:CEL140:IV:13850408:13852727:-1 9/11 None
GENEFINDER00000026168 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:13850408:13852560:-1 9/11 None
SNAP00000030263 ENSEMBL cdna:SNAP chromosome:CEL140:IV:11192734:11193753:-1 10/11 None
GENEFINDER00000030275 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:11192574:11193753:-1 10/11 None
SNAP00000030831 ENSEMBL cdna:SNAP chromosome:CEL140:IV:15498735:15499754:-1 10/11 None
GENEFINDER00000030884 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:15495901:15499754:-1 10/11 None
SNAP00000031586 ENSEMBL cdna:SNAP chromosome:CEL140:IV:13670964:13671551:1 11/11 None
GENEFINDER00000031591 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:13670964:13671551:1 11/11 None
SNAP00000035965 ENSEMBL cdna:SNAP chromosome:CEL140:IV:13915557:13916576:-1 9/11 None
GENEFINDER00000035968 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:13914664:13916576:-1 9/11 None
SNAP00000042432 ENSEMBL cdna:SNAP chromosome:CEL140:IV:14545577:14546596:-1 10/11 None
GENEFINDER00000042443 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:14545577:14546596:-1 10/11 None
SNAP00000043356 ENSEMBL cdna:SNAP chromosome:CEL140:IV:13113923:13114942:-1 9/11 None
GENEFINDER00000043368 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:13113175:13114942:-1 9/11 None
SNAP00000044303 ENSEMBL cdna:SNAP chromosome:CEL140:IV:17218519:17219538:1 10/11 None
GENEFINDER00000044308 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:17218519:17223572:1 10/11 None
SNAP00000000581 ENSEMBL cdna:SNAP chromosome:CEL140:V:16298425:16299444:-1 9/11 None
GENEFINDER00000000590 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16298425:16299444:-1 9/11 None
SNAP00000009346 ENSEMBL cdna:SNAP chromosome:CEL140:V:2172653:2173672:1 9/11 None
GENEFINDER00000009357 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2172653:2174240:1 9/11 None
SNAP00000009393 ENSEMBL cdna:SNAP chromosome:CEL140:V:18153705:18154724:-1 10/11 None
GENEFINDER00000009402 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:18153705:18154724:-1 10/11 None
GENEFINDER00000017233 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:10776631:10777251:1 10/11 None
SNAP00000025759 ENSEMBL cdna:SNAP chromosome:CEL140:V:3914630:3915649:-1 10/11 None
GENEFINDER00000025773 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3914630:3915649:-1 10/11 None
SNAP00000028602 ENSEMBL cdna:SNAP chromosome:CEL140:V:15303222:15304241:-1 9/11 None
GENEFINDER00000028605 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15301776:15307639:-1 9/11 None
SNAP00000029964 ENSEMBL cdna:SNAP chromosome:CEL140:V:2346540:2347559:-1 9/11 None
GENEFINDER00000029977 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2346560:2347559:-1 9/11 None
SNAP00000031719 ENSEMBL cdna:SNAP chromosome:CEL140:V:3789970:3797535:1 10/11 None
GENEFINDER00000031728 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3795190:3797535:1 10/11 None
SNAP00000032945 ENSEMBL cdna:SNAP chromosome:CEL140:V:2453337:2455520:-1 10/11 None
GENEFINDER00000032955 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2453927:2455520:-1 10/11 None
SNAP00000034548 ENSEMBL cdna:SNAP chromosome:CEL140:V:11322139:11324299:-1 9/11 None
GENEFINDER00000034558 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:11317672:11324299:-1 9/11 None
SNAP00000039932 ENSEMBL cdna:SNAP chromosome:CEL140:V:18745354:18746421:1 10/11 None
GENEFINDER00000039947 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:18745354:18746421:1 10/11 None
GENEFINDER00000043322 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2562779:2563798:-1 9/11 None
SNAP00000044321 ENSEMBL cdna:SNAP chromosome:CEL140:V:15490601:15495187:-1 9/11 None
GENEFINDER00000044330 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15488816:15493519:-1 9/11 None
SNAP00000042120 ENSEMBL cdna:SNAP chromosome:CEL140:X:17060701:17061720:1 9/11 None
GENEFINDER00000042126 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:17060701:17061720:1 9/11 None
SNAP00000008037 ENSEMBL cdna:SNAP chromosome:CEL140:X:5227753:5233228:-1 10/11 None
GENEFINDER00000008045 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:5232638:5233228:-1 10/11 None
SNAP00000031924 ENSEMBL cdna:SNAP chromosome:CEL140:X:5757242:5758261:1 9/11 None
GENEFINDER00000031931 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:5757242:5758261:1 9/11 None
SNAP00000019165 ENSEMBL cdna:SNAP chromosome:CEL140:X:17013375:17017727:1 9/11 None
GENEFINDER00000019172 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:17013375:17017727:1 9/11 None
GENEFINDER00000019174 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:17022182:17032011:-1 9/11 None
SNAP00000019168 ENSEMBL cdna:SNAP chromosome:CEL140:X:17030992:17032011:-1 9/11 None
GENEFINDER00000022362 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:47998:60750:1 10/11 None
SNAP00000022299 ENSEMBL cdna:SNAP chromosome:CEL140:X:53379:54398:1 10/11 None
GENEFINDER00000028092 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:15781194:15783627:-1 9/11 None
SNAP00000028078 ENSEMBL cdna:SNAP chromosome:CEL140:X:15782608:15783627:-1 9/11 None
T12B5.6 ENSEMBL cdna:known chromosome:CEL140:III:933572:936054:-1 gene:T12B5.6 9/11 A 
D1054.4 ENSEMBL cdna:pseudogene chromosome:CEL140:V:10776631:10777635:1 gene:D1054.4 10/11 A 
Y68A4A.4 ENSEMBL cdna:pseudogene chromosome:CEL140:V:17197962:17198982:1 gene:Y68A4A.4 9/11 A 
H28G03.5 ENSEMBL cdna:pseudogene chromosome:CEL140:X:5232209:5233228:-1 gene:H28G03.5 10/11 A 
Y7A5A.4 ENSEMBL cdna:known chromosome:CEL140:X:15781543:15783627:-1 gene:Y7A5A.4 9/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_070428 2/11 Cross Hyb Matching Probes A 
SNAP00000014784 8/11 Cross Hyb Matching Probes None
GENEFINDER00000014798 8/11 Cross Hyb Matching Probes None
GENEFINDER00000041619 7/11 Cross Hyb Matching Probes None
SNAP00000041606 7/11 Cross Hyb Matching Probes None
SNAP00000011901 8/11 Cross Hyb Matching Probes None
GENEFINDER00000011916 8/11 Cross Hyb Matching Probes None
SNAP00000013652 8/11 Cross Hyb Matching Probes None
GENEFINDER00000013654 8/11 Cross Hyb Matching Probes None
SNAP00000013876 8/11 Cross Hyb Matching Probes None
GENEFINDER00000013879 8/11 Cross Hyb Matching Probes None
GENEFINDER00000019481 5/11 Cross Hyb Matching Probes None
SNAP00000023153 8/11 Cross Hyb Matching Probes None
GENEFINDER00000023160 6/11 Cross Hyb Matching Probes None
SNAP00000011460 7/11 Cross Hyb Matching Probes None
SNAP00000016167 7/11 Cross Hyb Matching Probes None
GENEFINDER00000016177 5/11 Cross Hyb Matching Probes None
SNAP00000017216 8/11 Cross Hyb Matching Probes None
SNAP00000019762 2/11 Cross Hyb Matching Probes None
SNAP00000039553 8/11 Cross Hyb Matching Probes None
GENEFINDER00000039561 7/11 Cross Hyb Matching Probes None
SNAP00000042303 8/11 Cross Hyb Matching Probes None
GENEFINDER00000042309 8/11 Cross Hyb Matching Probes None
SNAP00000043318 8/11 Cross Hyb Matching Probes None
GENEFINDER00000010012 8/11 Cross Hyb Matching Probes None
SNAP00000010004 8/11 Cross Hyb Matching Probes None
SNAP00000043681 6/11 Cross Hyb Matching Probes None
GENEFINDER00000043691 5/11 Cross Hyb Matching Probes None
B0280.6 7/11 Cross Hyb Matching Probes None
Y40H7A.2 2/11 Cross Hyb Matching Probes A 
T06A1.6 2/11 Cross Hyb Matching Probes None
T06A1.2 1/11 Cross Hyb Matching Probes None
Y57E12AL.3 8/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Public Domain and Genome References
Gene Title transposase
Ensembl T12B5.6
D1054.4
Y68A4A.4
H28G03.5
Y7A5A.4
Entrez Gene 188445 Entrez gene
SwissProt Q9TZ30 EMBL-EBI
WormBase CE20064 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC68936 Hypothetical protein T12B5.6 [Caenorhabditis elegans] ref|NP_497296.1| T12B5.6 [Caenorhabditis elegans] 0.0
blast