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[172966_x_at] Zinc finger C-x8-C-x5-C-x3-H type (and similar). (2 domains)

Description F38C2.7 /REP_DB=WormBase Gene ID /WP=CE16006 /TR=O45493 /GB=CAB05193.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Zinc finger C-x8-C-x5-C-x3-H type (and similar). (2 domains)
Cluster 6grp_total > 57      4grp_total > 10      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 295
1 2 3 4 range
A 89.1
(-3)
A 		117.1
(-1.4)
A 		111.1
(-1.8)
A 		196.6
(3)
A 		108
B 123.5
(1.3)
A 		130
(2.6)
A 		100.7
(-3)
A 		132.3
(3)
A 		32
C 121.4
(-2.6)
M 		129.4
(-2.4)
A 		101.6
(-3)
A 		383.7
(3)
P 		282
avr 111.3
(-2.7) 		125.5
(-2.1) 		104.5
(-3) 		237.5
(3) 		133

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 124
1 2 3 4 5 6 range
A 124.1
(0.7)
A 		68.4
(-3)
A 		99.8
(-0.9)
P 		85.8
(-1.8)
A 		106
(-0.5)
P 		158
(3)
P 		90
B 105.4
(-0.3)
M 		98.8
(-0.8)
P 		83.4
(-1.9)
A 		69.3
(-3)
A 		84.6
(-1.8)
A 		148.6
(3)
P 		79
C 101.4
(-1.2)
A 		187.2
(3)
P 		63.6
(-3)
A 		120.6
(-0.2)
A 		97.6
(-1.3)
P 		172.2
(2.3)
P 		124
avr 110.3
(-0.8) 		118.1
(-0.2) 		82.3
(-3) 		91.9
(-2.3) 		96.1
(-1.9) 		159.6
(3) 		77
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 32.4
(3)
A 		25.4
(-3)
A 		29
(0.1)
A 		28.8
(-0.1)
A 		7
B 39.4
(3)
A 		32.1
(0.3)
A 		23.3
(-3)
A 		28.2
(-1.2)
A 		16
C 40.2
(-2)
M 		37.2
(-2.6)
A 		35.4
(-3)
A 		64.7
(3)
P 		29
avr 37.3
(1.3) 		31.6
(-1.7) 		29.2
(-3) 		40.6
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 22.9
(-2.6)
A 		24.3
(-2.1)
A 		21.7
(-3)
P 		21.8
(-3)
A 		32
(0.7)
P 		38.5
(3)
P 		17
B 36.7
(-0)
M 		32.9
(-0.6)
P 		20.3
(-2.7)
A 		18.3
(-3)
A 		34.4
(-0.4)
A 		55.4
(3)
P 		37
C 37.6
(0.1)
A 		57.1
(2.9)
P 		16.2
(-3)
A 		24.3
(-1.8)
A 		31.6
(-0.8)
P 		57.6
(3)
P 		41
avr 32.4
(-0.5) 		38.1
(0.6) 		19.4
(-3) 		21.5
(-2.6) 		32.7
(-0.4) 		50.5
(3) 		31
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172966_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10355
Sequence Type Exemplar sequence
Representative Public ID F38C2.7 NCBI
Target Description F38C2.7 /REP_DB=WormBase Gene ID /WP=CE16006 /TR=O45493 /GB=CAB05193.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Zinc finger C-x8-C-x5-C-x3-H type (and similar). (2 domains)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070529(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070529 NCBI Caenorhabditis elegans F38C2.7 (F38C2.7) mRNA, complete cds. 11/11 None
SNAP00000039188 ENSEMBL cdna:SNAP chromosome:CEL140:IV:16276741:16277352:-1 11/11 None
GENEFINDER00000039193 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:16276741:16277352:-1 11/11 None
F38C2.7 ENSEMBL cdna:known chromosome:CEL140:IV:16276741:16277352:-1 gene:F38C2.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_077996 1/11 Cross Hyb Matching Probes A 
NM_070548 2/11 Cross Hyb Matching Probes A 
NM_070619 1/11 Cross Hyb Matching Probes A 
SNAP00000004091 1/11 Cross Hyb Matching Probes None
GENEFINDER00000004187 1/11 Cross Hyb Matching Probes None
SNAP00000023353 2/11 Cross Hyb Matching Probes None
GENEFINDER00000023357 2/11 Cross Hyb Matching Probes None
SNAP00000029944 1/11 Cross Hyb Matching Probes None
GENEFINDER00000029948 1/11 Cross Hyb Matching Probes None
C35D6.4 2/11 Cross Hyb Matching Probes A 
Y116A8C.20 1/11 Cross Hyb Matching Probes A 
Y60A9.3 1/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:16350956-16351568(+) 93.14 93.14
chrIV:16276746-16277358(-) 100.0 100.0
Public Domain and Genome References
Gene Title Zinc finger C-x8-C-x5-C-x3-H type (and similar). (2 domains)
Ensembl F38C2.7
Entrez Gene 185463 Entrez gene
SwissProt O45493 EMBL-EBI
WormBase CE16006 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB05193 Hypothetical protein F38C2.7 [Caenorhabditis elegans] ref|NP_502930.1| F38C2.7 [Caenorhabditis elegans] 1.0E-106
blast CAB05147 Hypothetical protein C35D6.4 [Caenorhabditis elegans] ref|NP_502949.1| C35D6.4 [Caenorhabditis elegans] 2.0E-94
blast CAB60410 Hypothetical protein Y60A9.3 [Caenorhabditis elegans] ref|NP_510397.1| Y60A9.3 [Caenorhabditis elegans] 1.0E-91
Protein Domains
Database ID Description E-Value
Pfam IPR000571 EMBL-EBI Zn-finger, C-x8-C-x5-C-x3-H type 9.2E-10
Pfam IPR000571 EMBL-EBI Zn-finger, C-x8-C-x5-C-x3-H type 7.7E-13
Sequence
Target Sequence 
>C. ELEGANS:172966_X_AT
aaccaagaaaactctctctccagtttccttctgaaatgtgctttcccagctggaactacc
cctccattgctttctccaccatcttcatcaggatcttatgaagaagcccaattctcactt
tttgtgaatcaaaatgaaactgaacaaaaattgttttctaatcaatcattggccaaccga
gatccctgcacaattccagatgagcttcaccaagaaatgaagagtttgaaaaagaaagaa
gaagcattcaagacatccctttgtggttttcacagaagaggccaaaaatgtgcttatggt
gaaaaatgtaaatttgctcacagtgtacatgagctccgcttcccacagaccaaaagaaac
caccgtaactataaaacagtactttgcaataacttctcaacaactgggcattgcaagtac
ggaatcaggtgtcagttcatccacagatctatgaactcaacttcttcaaatcaatcaaat
aaaatggaaaatattaccattgacctgaatgttcaatcggacgtttttcgtgcatttgct
ctggactcaacaagtttattgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACCAAGAAAACTCTCTCTCCAGTT 205 147 31 Antisense
AATGTGCTTTCCCAGCTGGAACTAC 634 163 65 Antisense
TCTCCACCATCTTCATCAGGATCTT 49 611 103 Antisense
AGAAGCCCAATTCTCACTTTTTGTG 424 71 132 Antisense
TCAATCATTGGCCAACCGAGATCCC 357 631 192 Antisense
CGAGATCCCTGCACAATTCCAGATG 547 249 208 Antisense
AAGACATCCCTTTGTGGTTTTCACA 486 153 280 Antisense
TCCGCTTCCCACAGACCAAAAGAAA 636 595 365 Antisense
TCAGGTGTCAGTTCATCCACAGATC 574 623 455 Antisense
GTTTTTCGTGCATTTGCTCTGGACT 414 449 553 Antisense
GCTCTGGACTCAACAAGTTTATTGC 532 299 568 Antisense
Sequence Source Affymetrix Proprietary Database