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[172965_x_at] Zinc finger C-x8-C-x5-C-x3-H type (and similar). (2 domains)

Description C35D6.4 /REP_DB=WormBase Gene ID /WP=CE15683 /TR=O45289 /GB=CAB05147.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Zinc finger C-x8-C-x5-C-x3-H type (and similar). (2 domains)
Cluster 6grp_total > 01      4grp_total > 11      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 149
1 2 3 4 range
A 84.5
(-2.2)
A 		72.3
(-3)
P 		82.8
(-2.3)
P 		167.8
(3)
A 		96
B 95.7
(3)
A 		93.1
(2.6)
A 		60.6
(-3)
P 		70.4
(-1.3)
A 		35
C 72.3
(-2.6)
A 		79.2
(-2.3)
A 		61.3
(-3)
A 		209.7
(3)
P 		148
avr 84.2
(-1.8) 		81.5
(-2) 		68.2
(-3) 		149.3
(3) 		81

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 68
1 2 3 4 5 6 range
A 63.6
(-2.7)
A 		73.9
(-1.6)
A 		116.2
(3)
P 		60.9
(-3)
A 		100.5
(1.3)
P 		76.4
(-1.3)
P 		55
B 119.8
(3)
P 		103
(1.5)
P 		51.4
(-3)
A 		88.8
(0.3)
M 		98.9
(1.2)
P 		81.6
(-0.4)
P 		68
C 63.1
(-2.9)
A 		100.2
(3)
P 		62.2
(-3)
A 		84.2
(0.5)
A 		72.1
(-1.4)
P 		92.8
(1.8)
A 		38
avr 82.2
(-0.9) 		92.4
(3) 		76.6
(-3) 		78
(-2.5) 		90.5
(2.3) 		83.6
(-0.3) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 30.8
(3)
A 		15.7
(-3)
P 		21.7
(-0.6)
P 		24.6
(0.5)
A 		15
B 30.5
(3)
A 		23
(0.3)
A 		14
(-3)
P 		15
(-2.6)
A 		17
C 23.9
(-1.9)
A 		22.8
(-2.4)
A 		21.4
(-3)
A 		35.4
(3)
P 		14
avr 28.4
(3) 		20.5
(-2) 		19
(-3) 		25
(0.8) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 11.7
(-3)
A 		26.3
(1.7)
A 		25.3
(1.4)
P 		15.4
(-1.8)
A 		30.3
(3)
P 		18.6
(-0.8)
P 		19
B 41.7
(3)
P 		34.3
(1.5)
P 		12.5
(-3)
A 		23.5
(-0.7)
M 		40.2
(2.7)
P 		30.4
(0.7)
P 		29
C 23.4
(-0)
A 		30.6
(2.8)
P 		15.8
(-3)
A 		16.9
(-2.6)
A 		23.3
(-0.1)
P 		31.1
(3)
A 		15
avr 25.6
(0.4) 		30.4
(2.6) 		17.9
(-3) 		18.6
(-2.7) 		31.3
(3) 		26.7
(0.9) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172965_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9628
Sequence Type Exemplar sequence
Representative Public ID C35D6.4 NCBI
Target Description C35D6.4 /REP_DB=WormBase Gene ID /WP=CE15683 /TR=O45289 /GB=CAB05147.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Zinc finger C-x8-C-x5-C-x3-H type (and similar). (2 domains)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070548(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070548 NCBI Caenorhabditis elegans C35D6.4 (C35D6.4) mRNA, complete cds. 11/11 None
SNAP00000023353 ENSEMBL cdna:SNAP chromosome:CEL140:IV:16350951:16351562:1 11/11 None
GENEFINDER00000023357 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:16350951:16351562:1 11/11 None
C35D6.4 ENSEMBL cdna:known chromosome:CEL140:IV:16350951:16351562:1 gene:C35D6.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_077996 3/11 Cross Hyb Matching Probes A 
NM_070529 2/11 Cross Hyb Matching Probes A 
NM_070619 1/11 Cross Hyb Matching Probes A 
SNAP00000004091 1/11 Cross Hyb Matching Probes None
GENEFINDER00000004187 1/11 Cross Hyb Matching Probes None
SNAP00000039188 2/11 Cross Hyb Matching Probes None
GENEFINDER00000039193 2/11 Cross Hyb Matching Probes None
SNAP00000029944 3/11 Cross Hyb Matching Probes None
GENEFINDER00000029948 3/11 Cross Hyb Matching Probes None
F38C2.7 2/11 Cross Hyb Matching Probes A 
Y116A8C.20 1/11 Cross Hyb Matching Probes A 
Y60A9.3 3/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:16350956-16351568(+) 100.0 100.0
chrIV:16276746-16277358(-) 93.14 93.14
Public Domain and Genome References
Gene Title Zinc finger C-x8-C-x5-C-x3-H type (and similar). (2 domains)
Ensembl C35D6.4
Entrez Gene 183235 Entrez gene
SwissProt O45289 EMBL-EBI
WormBase CE15683 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB05147 Hypothetical protein C35D6.4 [Caenorhabditis elegans] ref|NP_502949.1| C35D6.4 [Caenorhabditis elegans] 1.0E-103
blast CAB05193 Hypothetical protein F38C2.7 [Caenorhabditis elegans] ref|NP_502930.1| F38C2.7 [Caenorhabditis elegans] 1.0E-90
blast CAB60410 Hypothetical protein Y60A9.3 [Caenorhabditis elegans] ref|NP_510397.1| Y60A9.3 [Caenorhabditis elegans] 5.0E-88
Protein Domains
Database ID Description E-Value
Pfam IPR000571 EMBL-EBI Zn-finger, C-x8-C-x5-C-x3-H type 9.2E-10
Pfam IPR000571 EMBL-EBI Zn-finger, C-x8-C-x5-C-x3-H type 7.7E-13
Sequence
Target Sequence 
>C. ELEGANS:172965_X_AT
tgaatccagcaaccaaactacttccctctccagttaccttctgaaatgtgctttctcatt
tggaactgcccctccatcgctttctccaccatcttctacaggatcttatgaagaagccga
tttctctcgttttgtgcaacaaaatgaaactgggcacaaattgacttcttatcaatcatt
ggccaaccgagatccttgcacaattccagatgagcttcaccaagaaatgaagagtttgaa
aaagaaagaagaagcattcaagacatccctatgtggttttcacagaagaggccaaaaatg
tgcttatggtgaaaaatgtaaatttgctcacagtgtacatgagctccgcttcccacagac
caaaagaaaccaccgtaactataaaacagtactttgcaataacttctcaacaactgggca
ttgcaagtacggaatcaggtgtcagttcatccacagatctatggactcaacttcttcaaa
tcaatcaaatgaaacagaaaatattaccattgatctgaatgttcaatcggacgtttttcg
tgcttttgctctggattca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAATCCAGCAACCAAACTACTTCC 663 575 21 Antisense
CCCTCTCCAGTTACCTTCTGAAATG 395 259 44 Antisense
TGTGCTTTCTCATTTGGAACTGCCC 73 557 67 Antisense
TCTCCACCATCTTCTACAGGATCTT 48 611 103 Antisense
GAAGAAGCCGATTTCTCTCGTTTTG 217 341 130 Antisense
GATTTCTCTCGTTTTGTGCAACAAA 573 427 139 Antisense
ACTGGGCACAAATTGACTTCTTATC 524 97 169 Antisense
GCACAATTCCAGATGAGCTTCACCA 628 317 218 Antisense
TCAGGTGTCAGTTCATCCACAGATC 575 623 455 Antisense
GATCTATGGACTCAACTTCTTCAAA 457 419 476 Antisense
TTTTCGTGCTTTTGCTCTGGATTCA 298 677 555 Antisense
Sequence Source Affymetrix Proprietary Database