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[172961_x_at]

Description T05C12.6B /REP_DB=WormBase Gene ID /WP=CE25100 /GEN=mig-5 /TR=O61720 /GB=CAB61022.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=presynaptic density protein (PSD-95) repeat-like domain
Cluster 6grp_highest_10_10 > 96      6grp_high1_10_10 > 68      4grp_highest_8_8 > 35      4grp_high_8_8 > 56      6grp_highest_nonorm > 84      6grp_total > 79      4grp_total > 63      6grp_highest_sub > Cu      6grp_cgc > 29      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 470
1 2 3 4 range
A 719
(3)
P 		456
(-2.7)
P 		577.9
(-0.1)
P 		444.3
(-3)
P 		275
B 793.3
(3)
P 		323.5
(-3)
P 		597.8
(0.5)
P 		380.6
(-2.3)
P 		470
C 699.2
(3)
P 		330.1
(-3)
P 		547.7
(0.5)
P 		383.1
(-2.1)
P 		369
avr 737.2
(3) 		369.9
(-3) 		574.5
(0.3) 		402.7
(-2.5) 		367

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 589
1 2 3 4 5 6 range
A 756.9
(0.4)
P 		673.2
(-0.6)
P 		477.8
(-3)
P 		549.2
(-2.1)
P 		784.6
(0.7)
P 		969.6
(3)
P 		492
B 539.5
(-2.9)
P 		746.7
(-0.1)
P 		529.1
(-3)
P 		537.4
(-2.9)
P 		660.7
(-1.3)
P 		981.1
(3)
P 		452
C 582.1
(-1.6)
P 		694.4
(-0.5)
P 		619.1
(-1.3)
P 		448.5
(-3)
P 		639.2
(-1.1)
P 		1037.8
(3)
P 		589
avr 626.2
(-1.6) 		704.8
(-0.6) 		542
(-2.6) 		511.7
(-3) 		694.8
(-0.7) 		996.2
(3) 		485
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 197
1 2 3 4 range
A 261.8
(3)
P 		99
(-2)
P 		151.1
(-0.4)
P 		65
(-3)
P 		197
B 253
(3)
P 		79.9
(-3)
P 		138.5
(-1)
P 		81.1
(-3)
P 		173
C 231.5
(3)
P 		94.9
(-1.9)
P 		190.9
(1.5)
P 		64.6
(-3)
P 		167
avr 248.8
(3) 		91.3
(-2.3) 		160.2
(0) 		70.2
(-3) 		179

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 276
1 2 3 4 5 6 range
A 139.5
(-1.4)
P 		239.4
(3)
P 		104.1
(-3)
P 		139.3
(-1.4)
P 		236.8
(2.9)
P 		236.1
(2.9)
P 		135
B 187.7
(-1.5)
P 		248.6
(0)
P 		128.5
(-3)
P 		142.3
(-2.7)
P 		268.5
(0.5)
P 		365.8
(3)
P 		237
C 215.8
(-0.1)
P 		211.9
(-0.2)
P 		157.6
(-1.4)
P 		90.2
(-3)
P 		206.9
(-0.3)
P 		347.4
(3)
P 		257
avr 181
(-1.2) 		233.3
(0.4) 		130.1
(-2.8) 		123.9
(-3) 		237.4
(0.5) 		316.4
(3) 		193
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172961_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3832
Sequence Type Exemplar sequence
Representative Public ID T05C12.6B NCBI
Target Description T05C12.6B /REP_DB=WormBase Gene ID /WP=CE25100 /GEN=mig-5 /TR=O61720 /GB=CAB61022.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=presynaptic density protein (PSD-95) repeat-like domain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027147(11), NM_001027146(11), NM_001027145(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027147 NCBI Caenorhabditis elegans abnormal cell MIGration family member (mig-5) (mig-5) mRNA, complete cds. 11/11 None
NM_001027146 NCBI Caenorhabditis elegans abnormal cell MIGration family member (mig-5) (mig-5) mRNA, complete cds. 11/11 None
NM_001027145 NCBI Caenorhabditis elegans abnormal cell MIGration family member (mig-5) (mig-5) mRNA, complete cds. 11/11 None
SNAP00000002113 ENSEMBL cdna:SNAP chromosome:CEL140:II:8182399:8187397:-1 11/11 None
GENEFINDER00000002125 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:8182399:8184929:-1 11/11 None
T05C12.6c ENSEMBL cdna:known chromosome:CEL140:II:8182244:8184944:-1 gene:T05C12.6 11/11 A 
T05C12.6b ENSEMBL cdna:known chromosome:CEL140:II:8182244:8184942:-1 gene:T05C12.6 11/11 A 
T05C12.6a ENSEMBL cdna:known chromosome:CEL140:II:8182248:8184929:-1 gene:T05C12.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8182426-8184926(-) 100.0 100.0
Public Domain and Genome References
Ensembl T05C12.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAC42334 Hypothetical protein T05C12.6c [Caenorhabditis elegans] ref|NP_001022318.1| abnormal cell MIGration family member (mig-5) [Caenorhabditis elegans] 0.0
blast CAB61022 Hypothetical protein T05C12.6b [Caenorhabditis elegans] ref|NP_001022317.1| abnormal cell MIGration family member (mig-5) [Caenorhabditis elegans] gb|AAC16434.1| cytoplasmic signalling transducer [Caenorhabditis elegans] 0.0
blast CAA91307 Hypothetical protein T05C12.6a [Caenorhabditis elegans] ref|NP_001022316.1| abnormal cell MIGration family member (mig-5) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001478 EMBL-EBI PDZ/DHR/GLGF domain 1.4E-13
Pfam IPR000591 EMBL-EBI Pleckstrin putative G-protein interacting domain 4.3E-31
Pfam IPR001158 EMBL-EBI DIX domain 3.1E-53
Pfam IPR001478 EMBL-EBI PDZ/DHR/GLGF domain 1.9E-10
Pfam IPR000591 EMBL-EBI Pleckstrin putative G-protein interacting domain 4.3E-31
Pfam IPR001158 EMBL-EBI DIX domain 3.1E-53
Pfam IPR000591 EMBL-EBI Pleckstrin putative G-protein interacting domain 4.3E-31
Pfam IPR001478 EMBL-EBI PDZ/DHR/GLGF domain 1.4E-13
Pfam IPR000591 EMBL-EBI Pleckstrin putative G-protein interacting domain 4.3E-31
Sequence
Target Sequence 
>C. ELEGANS:172961_X_AT
gctgcgagattgttagctgctggtcttatcagacatgtcgtcagcaagttgacattcaca
gaaaagtgctactatgtattcggtgatggaattcttggcaatgatcgtaattccacggac
accactggtacgagtggaactacaatgcgagttgaagcaactactgaagtgacgtatgtt
ggctcaccagcaccacatgctctggcagcacgagttggaagaaatattcctcatcgatta
gaaaccactactctaagcccagttgctcatgaccaaacatggcttcgaagacgtcgagat
tgtgagagtcctatgacaaatgattacgcatcgatggtcggagaaagccaaattggaatg
aatccagtcggaaattatcatgtttttgggacgaaaaataatcaccgtcaggtaccggca
ccttctcaagtgacatcctcaagcttgacaaacgttacaaattccaggaagtggtggctt
aggaggccctccgccgactcctctatccagtactatggttctagcagcttctccgattca
gtcgcagaacgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTGCGAGATTGTTAGCTGCTGGTC 600 297 1429 Antisense
GTAATTCCACGGACACCACTGGTAC 35 461 1535 Antisense
AGTGACGTATGTTGGCTCACCAGCA 191 57 1596 Antisense
ACCACATGCTCTGGCAGCACGAGTT 440 85 1620 Antisense
ACTCTAAGCCCAGTTGCTCATGACC 166 99 1678 Antisense
AATAATCACCGTCAGGTACCGGCAC 49 151 1825 Antisense
ACCTTCTCAAGTGACATCCTCAAGC 385 87 1848 Antisense
GAAGTGGTGGCTTAGGAGGCCCTCC 610 335 1896 Antisense
CGACTCCTCTATCCAGTACTATGGT 304 251 1923 Antisense
TACTATGGTTCTAGCAGCTTCTCCG 287 645 1939 Antisense
CTTCTCCGATTCAGTCGCAGAACGC 275 221 1956 Antisense
Sequence Source Affymetrix Proprietary Database