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[172959_s_at]

Description C57227 /REP_DB=TREMBL Accession /FEA=EST Transcript /GB=C57227 /DEF=C.elegans cDNA clone yk300g9 : 3prime end, single read.
Cluster 6grp_total > 02      4grp_total > 28      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 76
1 2 3 4 range
A 19.9
(-0.6)
A 		12.3
(-2.7)
A 		11.2
(-3)
A 		33.3
(3)
A 		22
B 62.7
(3)
A 		30
(-0.7)
A 		14.3
(-2.4)
A 		9.2
(-3)
A 		54
C 31.9
(-3)
A 		74.1
(1.8)
A 		38.1
(-2.3)
A 		84.9
(3)
A 		53
avr 38.2
(1.8) 		38.8
(2) 		21.2
(-3) 		42.5
(3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 73
1 2 3 4 5 6 range
A 12.3
(-1.6)
A 		33.6
(3)
A 		27.2
(1.6)
A 		7.3
(-2.7)
A 		9
(-2.3)
A 		5.8
(-3)
A 		28
B 58.5
(1.6)
A 		73.8
(3)
A 		9.7
(-3)
A 		41.9
(0)
A 		11.5
(-2.8)
A 		13.9
(-2.6)
A 		64
C 65.1
(2.1)
A 		76.4
(3)
A 		3.8
(-3)
A 		37.6
(-0.2)
A 		13.9
(-2.2)
A 		6.8
(-2.8)
A 		73
avr 45.3
(1.2) 		61.3
(3) 		13.6
(-2.5) 		28.9
(-0.7) 		11.5
(-2.7) 		8.8
(-3) 		53
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 7.3
(3)
A 		2.7
(-3)
A 		2.9
(-2.7)
A 		4.9
(-0.1)
A 		5
B 20
(3)
A 		7.4
(-1.2)
A 		3.3
(-2.6)
A 		2
(-3)
A 		18
C 10.6
(-3)
A 		21.3
(3)
A 		13.3
(-1.5)
A 		14.3
(-0.9)
A 		11
avr 12.6
(3) 		10.5
(0.9) 		6.5
(-3) 		7.1
(-2.4) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 2.3
(-2.5)
A 		11.9
(3)
A 		5.9
(-0.4)
A 		1.9
(-2.7)
A 		2.7
(-2.3)
A 		1.4
(-3)
A 		11
B 20.4
(1.9)
A 		24.6
(3)
A 		2.4
(-3)
A 		11.1
(-0.6)
A 		4.7
(-2.4)
A 		5.2
(-2.2)
A 		22
C 24.1
(3)
A 		23.3
(2.8)
A 		1
(-3)
A 		7.6
(-1.3)
A 		4.5
(-2.1)
A 		2.3
(-2.7)
A 		23
avr 15.6
(1.5) 		19.9
(3) 		3.1
(-3) 		6.9
(-1.6) 		4
(-2.6) 		3
(-3) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172959_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28263
Sequence Type Exemplar sequence
Representative Public ID C57227 NCBI
Target Description C57227 /REP_DB=TREMBL Accession /FEA=EST Transcript /GB=C57227 /DEF=C.elegans cDNA clone yk300g9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060791(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060791 NCBI Caenorhabditis elegans T07D10.1 (T07D10.1) mRNA, complete cds. 11/11 A 
GENEFINDER00000024107 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12610019:12614368:-1 11/11 None
SNAP00000024086 ENSEMBL cdna:SNAP chromosome:CEL140:I:12612006:12614368:-1 11/11 None
T07D10.1 ENSEMBL cdna:known chromosome:CEL140:I:12611893:12614369:-1 gene:T07D10.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12613396-12614263(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T07D10.1
Entrez Gene 173130 Entrez gene
SwissProt O45765 EMBL-EBI
WormBase CE21161 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04716 Hypothetical protein T07D10.1 [Caenorhabditis elegans] ref|NP_493192.1| T07D10.1 [Caenorhabditis elegans] 1.0E-118
blast CAB04716 Hypothetical protein T07D10.1 [Caenorhabditis elegans] ref|NP_493192.1| T07D10.1 [Caenorhabditis elegans] 1.0E-117
blast CAE64121 Hypothetical protein CBG08735 [Caenorhabditis briggsae] 6.0E-69
blast CAE64121 Hypothetical protein CBG08735 [Caenorhabditis briggsae] 3.0E-68
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493192.1 1 9-31
T07D10.1 1 9-31
GENEFINDER00000024107 2 4-26,385-407
SNAP00000024086 1 9-31
Sequence
Target Sequence 
>C. ELEGANS:172959_S_AT
tctaggatttcttatgtttcttctgtatttgcttctccatcaaatctactaccaaataaa
gctgcgtcgtgaacgaaaagtgcccaacacactccaccaattcgagaacattcccggcct
gcacacaatccgtacgcccagccacaccttcttctgtggagcacaaaactaccgtcagag
ctccaagaatccacaaatctacagtcaagaccgtctaaaagtgcagaggctcttgcggaa
gctgctcgaaaatccacagatccac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTAGGATTTCTTATGTTTCTTCTG 360 615 18 Antisense
TATGTTTCTTCTGTATTTGCTTCTC 189 657 30 Antisense
TGCTTCTCCATCAAATCTACTACCA 681 579 47 Antisense
TACTACCAAATAAAGCTGCGTCGTG 491 645 64 Antisense
GAACGAAAAGTGCCCAACACACTCC 561 343 88 Antisense
CACCAATTCGAGAACATTCCCGGCC 466 201 112 Antisense
CCACACCTTCTTCTGTGGAGCACAA 277 275 159 Antisense
AACTACCGTCAGAGCTCCAAGAATC 237 139 184 Antisense
GACCGTCTAAAAGTGCAGAGGCTCT 116 383 226 Antisense
GGCTCTTGCGGAAGCTGCTCGAAAA 428 539 245 Antisense
GCTGCTCGAAAATCCACAGATCCAC 524 297 258 Antisense
Sequence Source Affymetrix Proprietary Database