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[172958_s_at] serine carboxypeptidase

Description CEK101H4R /REP_DB=TREMBL Accession /FEA=EST Transcript /GB=D66516 /DEF=C.elegans cDNA clone yk101h4 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 40      6grp_high1_10_10 > 06      4grp_highest_8_8 > 32      4grp_high_8_8 > 51      6grp_highest_nonorm > 01      6grp_total > 06      4grp_total > 60      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4264
1 2 3 4 range
A 4270.8
(3)
P 		4127.8
(2.8)
P 		3602.4
(2)
P 		226.3
(-3)
P 		4045
B 4104
(2.7)
P 		3870.5
(2.4)
P 		4284.3
(3)
P 		225.5
(-3)
P 		4059
C 4489
(3)
P 		3882.8
(2.1)
P 		3603.9
(1.7)
P 		242.8
(-3)
P 		4246
avr 4287.9
(3) 		3960.4
(2.5) 		3830.2
(2.3) 		231.5
(-3) 		4056

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3746
1 2 3 4 5 6 range
A 2199.6
(1.3)
P 		2708
(3)
P 		1625.2
(-0.7)
P 		1295.3
(-1.8)
P 		941.3
(-3)
P 		1000.5
(-2.8)
P 		1767
B 2242.4
(3)
P 		1529.3
(0.2)
P 		1618.8
(0.6)
P 		1133.4
(-1.3)
P 		1132.3
(-1.3)
P 		702.4
(-3)
P 		1540
C 4430.4
(3)
P 		1342
(-1.9)
P 		1979.5
(-0.9)
P 		995.6
(-2.5)
P 		1887.1
(-1.1)
P 		684.9
(-3)
P 		3746
avr 2957.5
(3) 		1859.8
(-0) 		1741.2
(-0.4) 		1141.4
(-2) 		1320.2
(-1.5) 		795.9
(-3) 		2162
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1522
1 2 3 4 range
A 1555
(3)
P 		896
(0.4)
P 		941.7
(0.6)
P 		33.1
(-3)
P 		1522
B 1308.7
(3)
P 		955.9
(1.3)
P 		992.8
(1.5)
P 		48.1
(-3)
P 		1261
C 1486
(3)
P 		1116.3
(1.5)
P 		1256.1
(2)
P 		40.9
(-3)
P 		1445
avr 1449.9
(3) 		989.4
(1) 		1063.5
(1.4) 		40.7
(-3) 		1409

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1442
1 2 3 4 5 6 range
A 405.5
(-1.6)
P 		963.1
(3)
P 		353.9
(-2.1)
P 		328.5
(-2.3)
P 		284
(-2.7)
P 		243.6
(-3)
P 		720
B 780.3
(3)
P 		509
(-0.1)
P 		393.1
(-1.5)
P 		300.2
(-2.6)
P 		460
(-0.7)
P 		261.9
(-3)
P 		518
C 1642.2
(3)
P 		409.5
(-2.1)
P 		503.8
(-1.7)
P 		200.2
(-3)
P 		610.7
(-1.3)
P 		229.3
(-2.9)
P 		1442
avr 942.7
(3) 		627.2
(0.3) 		416.9
(-1.5) 		276.3
(-2.7) 		451.6
(-1.2) 		244.9
(-3) 		698
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172958_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28275
Sequence Type Exemplar sequence
Representative Public ID CEK101H4R NCBI
Target Description CEK101H4R /REP_DB=TREMBL Accession /FEA=EST Transcript /GB=D66516 /DEF=C.elegans cDNA clone yk101h4 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064106(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064106 NCBI Caenorhabditis elegans F13D12.6 (F13D12.6) mRNA, complete cds. 11/11 A 
SNAP00000015033 ENSEMBL cdna:SNAP chromosome:CEL140:II:11739426:11742652:1 11/11 None
GENEFINDER00000015054 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:11739426:11742652:1 11/11 None
F13D12.6.1 ENSEMBL cdna:known chromosome:CEL140:II:11739366:11743009:1 gene:F13D12.6 11/11 A 
F13D12.6.2 ENSEMBL cdna:known chromosome:CEL140:II:11739389:11742781:1 gene:F13D12.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11739447-11739805(+) 79.23 79.23
Public Domain and Genome References
Gene Title serine carboxypeptidase
Ensembl F13D12.6
Entrez Gene 174802 Entrez gene
SwissProt P52715 EMBL-EBI
WormBase CE02185 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:17814_AT serine carboxypeptidase S10 family protein at
ATH1-121501:252085_S_AT serine carboxypeptidase S10 family protein at
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4185 serine carboxypeptidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA88947 Hypothetical protein F13D12.6 [Caenorhabditis elegans] ref|NP_496507.1| F13D12.6 [Caenorhabditis elegans] sp|P52715|YUA6_CAEEL Putative serine carboxypeptidase F13S12.6 precursor 0.0
blast CAE59701 Hypothetical protein CBG03132 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001563 EMBL-EBI Peptidase S10, serine carboxypeptidase 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496507.1 1 7-29
F13D12.6.1 1 7-29
F13D12.6.2 1 7-29
SNAP00000015033 1 7-29
GENEFINDER00000015054 1 7-29
Sequence
Target Sequence 
>C. ELEGANS:172958_S_AT
tgatcacaaatctccctggagctccaatctcaaactacaagcaatattcgggctactaca
atgtgggaaccaagaagaatcatatgctccactactggttcggcgagtctcaaagcaacc
catcaactgatccagttcttctctggnttaccggtggaccaggatgctccggattgtcag
ttcttctcaccgagtggggaccatggaatgtcaacaccg

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGATCACAAATCTCCCTGGAGCTCC 4 565 55 Antisense
ACAAATCTCCCTGGAGCTCCAATCT 694 111 60 Antisense
AGCAATATTCGGGCTACTACAATGT 548 73 94 Antisense
ATATTCGGGCTACTACAATGTGGGA 190 11 98 Antisense
GGGCTACTACAATGTGGGAACCAAG 106 493 104 Antisense
GAAGAATCATATGCTCCACTACTGG 222 341 128 Antisense
AATCATATGCTCCACTACTGGTTCG 226 171 132 Antisense
AGTCTCAAAGCAACCCATCAACTGA 344 61 160 Antisense
AAAGCAACCCATCAACTGATCCAGT 448 123 166 Antisense
TCTTCTCACCGAGTGGGGACCATGG 616 615 236 Antisense
TGGGGACCATGGAATGTCAACACCG 674 551 249 Antisense
Sequence Source Affymetrix Proprietary Database