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[172956_at]

Description C39051_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=C39051 /DEF=C.elegans cDNA clone yk505b3 : 3prime end, single read.
Cluster 6grp_total > 37      4grp_total > 04      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 101
1 2 3 4 range
A 5
(-3)
A 		70.7
(2.2)
A 		11.4
(-2.5)
A 		81.4
(3)
A 		76
B 64.4
(3)
A 		8.2
(-3)
A 		63.4
(2.9)
A 		26
(-1.1)
A 		56
C 44.7
(-0.6)
A 		4
(-3)
A 		30.8
(-1.4)
A 		104.7
(3)
A 		101
avr 38
(-1.6) 		27.6
(-3) 		35.2
(-1.9) 		70.7
(3) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 67
1 2 3 4 5 6 range
A 68.5
(3)
A 		64.9
(2.7)
A 		1.8
(-3)
A 		42.7
(0.7)
A 		15.6
(-1.8)
A 		55.5
(1.8)
A 		67
B 41.9
(2.1)
A 		42.7
(2.2)
A 		48.9
(3)
A 		2
(-3)
A 		11.5
(-1.8)
A 		41.3
(2)
A 		47
C 46.6
(3)
A 		7.4
(-3)
A 		24.3
(-0.4)
A 		18.3
(-1.3)
A 		7.2
(-3)
A 		22.8
(-0.6)
A 		39
avr 52.3
(3) 		38.3
(0.9) 		25
(-1) 		21
(-1.6) 		11.4
(-3) 		39.9
(1.2) 		41
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 1.8
(-3)
A 		15.3
(3)
A 		3
(-2.5)
A 		11.9
(1.5)
A 		14
B 20.5
(3)
A 		2
(-3)
A 		14.7
(1.1)
A 		5.5
(-1.9)
A 		19
C 14.8
(2)
A 		1.2
(-3)
A 		10.7
(0.5)
A 		17.6
(3)
A 		16
avr 12.4
(3) 		6.2
(-3) 		9.5
(0.2) 		11.7
(2.3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 12.6
(0.2)
A 		23.1
(3)
A 		0.4
(-3)
A 		10.8
(-0.3)
A 		4.7
(-1.9)
A 		13.5
(0.5)
A 		23
B 14.6
(2.7)
A 		14.2
(2.5)
A 		11.9
(1.6)
A 		0.5
(-3)
A 		4.7
(-1.3)
A 		15.4
(3)
A 		15
C 17.3
(3)
A 		2.3
(-3)
A 		6.2
(-1.4)
A 		3.7
(-2.4)
A 		2.3
(-3)
A 		7.6
(-0.9)
A 		15
avr 14.8
(3) 		13.2
(2.1) 		6.2
(-1.7) 		5
(-2.4) 		3.9
(-3) 		12.2
(1.6) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 172956_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26427
Sequence Type Exemplar sequence
Representative Public ID C39051 NCBI
Target Description C39051_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=C39051 /DEF=C.elegans cDNA clone yk505b3 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059884
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059884 NCBI Caenorhabditis elegans F02E9.5 (F02E9.5) mRNA, complete cds. A 
SNAP00000012709 ENSEMBL cdna:SNAP chromosome:CEL140:I:8433291:8434200:-1 None
F02E9.5 ENSEMBL cdna:known chromosome:CEL140:I:8433134:8435107:-1 gene:F02E9.5 A 
GENEFINDER00000012717 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:8433291:8434200:-1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:8433079-8433369(-) 88.33 88.33
Public Domain and Genome References
Gene Title
Ensembl F02E9.5
Entrez Gene 172629 Entrez gene
SwissProt O17769 EMBL-EBI
WormBase CE23628 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04054 Hypothetical protein F02E9.5 [Caenorhabditis elegans] ref|NP_492285.1| F02E9.5 [Caenorhabditis elegans] 1.0E-115
blast CAB04054 Hypothetical protein F02E9.5 [Caenorhabditis elegans] ref|NP_492285.1| F02E9.5 [Caenorhabditis elegans] 1.0E-92
blast CAB04054 Hypothetical protein F02E9.5 [Caenorhabditis elegans] ref|NP_492285.1| F02E9.5 [Caenorhabditis elegans] 7.0E-88
blast CAE67275 Hypothetical protein CBG12723 [Caenorhabditis briggsae] 2.0E-52
blast CAE67275 Hypothetical protein CBG12723 [Caenorhabditis briggsae] 3.0E-51
Sequence
Target Sequence 
>C. ELEGANS:172956_AT
caccgtttccagaggccgaagaggtcggcggactttccgaatgtttcactcattttgtcc
gcgttgaattggaaatgtcttcgttggctggatcggtgtacgtttgatggtgagaacagg
gggaaaaagcaaatcgggaccgactcgggaatgaatatccatcttttcatgtgcatctat
gttccattgttttgttgctatattgctcattgct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACCGTTTCCAGAGGCCGAAGAGGT 407 199 63 Antisense
AGAGGTCGGCGGACTTTCCGAATGT 215 57 82 Antisense
GGAAATGTCTTCGTTGGCTGGATCG 466 527 133 Antisense
GTTGGCTGGATCGGTGTACGTTTGA 678 431 145 Antisense
GATCGGTGTACGTTTGATGGTGAGA 707 417 153 Antisense
AGCAAATCGGGACCGACTCGGGAAT 595 1 190 Antisense
GACCGACTCGGGAATGAATATCCAT 142 383 200 Antisense
GAATATCCATCTTTTCATGTGCATC 64 327 215 Antisense
TCATGTGCATCTATGTTCCATTGTT 280 623 229 Antisense
CTATGTTCCATTGTTTTGTTGCTAT 331 225 239 Antisense
TTTTGTTGCTATATTGCTCATTGCT 177 679 252 Antisense
Sequence Source Affymetrix Proprietary Database