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[172955_s_at] ser/thr protein kinase

Description C59328_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=C59328 /DEF=C.elegans cDNA clone yk411d9 : 3prime end, single read.
Cluster 6grp_total > 66      4grp_total > 35      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 67
1 2 3 4 range
A 8
(-3)
A 		46.4
(2.3)
A 		9.1
(-2.8)
A 		51.2
(3)
A 		43
B 32
(-0.5)
A 		71.5
(3)
A 		30.6
(-0.7)
A 		4.7
(-3)
A 		67
C 6.7
(-2.9)
A 		9.2
(-2.5)
A 		6.3
(-3)
A 		44.2
(3)
A 		38
avr 15.6
(-2.9) 		42.4
(3) 		15.3
(-3) 		33.4
(1) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 93
1 2 3 4 5 6 range
A 2.6
(-3)
A 		44.7
(2.2)
A 		24.7
(-0.3)
A 		4.6
(-2.8)
A 		25.2
(-0.2)
A 		51.6
(3)
A 		49
B 42.2
(-1.5)
A 		29.5
(-2.6)
A 		42.9
(-1.5)
A 		25.3
(-3)
A 		51.4
(-0.8)
A 		95.1
(3)
M 		70
C 14.2
(-3)
A 		34.9
(-1.4)
A 		33.1
(-1.5)
A 		38.9
(-1.1)
A 		24.9
(-2.2)
A 		90.6
(3)
M 		76
avr 19.7
(-3) 		36.4
(-1.3) 		33.6
(-1.6) 		22.9
(-2.7) 		33.8
(-1.6) 		79.1
(3) 		59
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 2.9
(-2.6)
A 		10.1
(3)
A 		2.4
(-3)
A 		7.5
(1)
A 		8
B 10.2
(0.3)
A 		17.7
(3)
A 		7.1
(-0.8)
A 		1
(-3)
A 		17
C 2.2
(-3)
A 		2.6
(-2.5)
A 		2.2
(-3)
A 		7.5
(3)
A 		5
avr 5.1
(-1.8) 		10.1
(3) 		3.9
(-3) 		5.3
(-1.6) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 0.5
(-3)
A 		15.9
(3)
A 		5.4
(-1.1)
A 		1.2
(-2.7)
A 		7.6
(-0.2)
A 		12.6
(1.7)
A 		15
B 14.7
(-1.3)
A 		9.8
(-2.4)
A 		10.4
(-2.2)
A 		6.7
(-3)
A 		20.9
(-0)
A 		35.5
(3)
M 		29
C 5.3
(-3)
A 		10.7
(-1.7)
A 		8.4
(-2.3)
A 		7.8
(-2.4)
A 		8.1
(-2.3)
A 		30.3
(3)
M 		25
avr 6.8
(-2.5) 		12.1
(-1) 		8.1
(-2.2) 		5.2
(-3) 		12.2
(-1) 		26.1
(3) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172955_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26631
Sequence Type Exemplar sequence
Representative Public ID C59328 NCBI
Target Description C59328_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=C59328 /DEF=C.elegans cDNA clone yk411d9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068307(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068307 NCBI Caenorhabditis elegans C09B9.4 (C09B9.4) mRNA, complete cds. 11/11 A 
SNAP00000007229 ENSEMBL cdna:SNAP chromosome:CEL140:IV:5031627:5033298:-1 11/11 None
GENEFINDER00000007239 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:5031627:5033298:-1 11/11 None
C09B9.4 ENSEMBL cdna:known chromosome:CEL140:IV:5031611:5033358:-1 gene:C09B9.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:5031666-5031876(-) 68.67 68.67
Public Domain and Genome References
Gene Title ser/thr protein kinase
Ensembl C09B9.4
Entrez Gene 177271 Entrez gene
SwissProt Q17853 EMBL-EBI
WormBase CE06796 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6468 protein amino acid phosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4672 protein kinase activity inferred from electronic annotation QuickGO AmiGO
4674 protein serine/threonine kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB37560 Hypothetical protein C09B9.4 [Caenorhabditis elegans] ref|NP_500708.1| C09B9.4 [Caenorhabditis elegans] 0.0
blast CAE72809 Hypothetical protein CBG20086 [Caenorhabditis briggsae] 1.0E-165
blast CAB05158 Hypothetical protein C49C3.2 [Caenorhabditis elegans] ref|NP_503078.2| C49C3.2 [Caenorhabditis elegans] 1.0E-127
Sequence
Target Sequence 
>C. ELEGANS:172955_S_AT
ttctgtcaattgctagaaatgagcttatcgacttgacggctccatttgactggcaagtca
acccagttcttcgttctttggttcgactcggaccattaagctgtggtgagctcacccgca
t

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCTGTCAATTGCTAGAAATGAGCT 566 691 144 Antisense
GAAATGAGCTTATCGACTTGACGGC 660 361 159 Antisense
TTATCGACTTGACGGCTCCATTTGA 99 671 168 Antisense
CTTGACGGCTCCATTTGACTGGCAA 83 217 175 Antisense
GACGGCTCCATTTGACTGGCAAGTC 141 377 178 Antisense
CTGGCAAGTCAACCCAGTTCTTCGT 337 225 193 Antisense
CAGTTCTTCGTTCTTTGGTTCGACT 577 201 207 Antisense
TCTTCGTTCTTTGGTTCGACTCGGA 493 617 211 Antisense
TTCTTTGGTTCGACTCGGACCATTA 666 687 217 Antisense
GTTCGACTCGGACCATTAAGCTGTG 9 443 224 Antisense
TAAGCTGTGGTGAGCTCACCCGCAT 376 637 240 Antisense
Sequence Source Affymetrix Proprietary Database