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[172954_at]

Description C58089_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=C58089 /DEF=C.elegans cDNA clone yk311c5 : 3prime end, single read.
Cluster 6grp_total > 43      4grp_total > 63      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 16.6
(-1)
A 		33
(3)
A 		21.1
(0.1)
A 		8.5
(-3)
A 		25
B 25.9
(3)
A 		10.5
(-1.4)
A 		24.3
(2.5)
A 		4.9
(-3)
A 		21
C 27.2
(1.5)
A 		4.1
(-3)
A 		30.5
(2.1)
A 		35.1
(3)
A 		31
avr 23.2
(1.7) 		15.9
(-3) 		25.3
(3) 		16.2
(-2.8) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 48.5
(3)
A 		25.2
(-0.6)
A 		9.7
(-3)
A 		14.6
(-2.2)
A 		27.7
(-0.2)
A 		13.2
(-2.5)
A 		39
B 13.9
(-1.3)
A 		27.7
(0.9)
A 		41.1
(3)
A 		3.3
(-2.9)
A 		25.8
(0.6)
A 		2.8
(-3)
A 		38
C 4.9
(-2.7)
A 		3.9
(-3)
A 		23.1
(3)
A 		7.2
(-2)
A 		18
(1.4)
A 		15.4
(0.6)
A 		19
avr 22.4
(2.2) 		18.9
(0.9) 		24.6
(3) 		8.4
(-3) 		23.8
(2.7) 		10.5
(-2.2) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 6
(1.8)
A 		7.2
(3)
A 		5.5
(1.3)
A 		1.3
(-3)
A 		6
B 8.3
(3)
A 		2.6
(-1.7)
A 		5.6
(0.8)
A 		1
(-3)
A 		7
C 9
(2)
A 		1.2
(-3)
A 		10.6
(3)
A 		5.9
(-0)
A 		9
avr 7.8
(3) 		3.7
(-1.8) 		7.2
(2.3) 		2.7
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 8.9
(2.9)
A 		9
(3)
A 		2.1
(-3)
A 		3.7
(-1.6)
A 		8.4
(2.5)
A 		3.2
(-2)
A 		7
B 4.9
(-0.5)
A 		9.2
(2.2)
A 		10
(2.7)
A 		0.9
(-3)
A 		10.5
(3)
A 		1
(-2.9)
A 		10
C 1.8
(-2.2)
A 		1.2
(-3)
A 		5.9
(3)
A 		1.4
(-2.7)
A 		5.8
(2.9)
A 		5.1
(2)
A 		5
avr 5.2
(0.1) 		6.5
(1.4) 		6
(0.9) 		2
(-3) 		8.2
(3) 		3.1
(-1.9) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 172954_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26602
Sequence Type Exemplar sequence
Representative Public ID C58089 NCBI
Target Description C58089_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=C58089 /DEF=C.elegans cDNA clone yk311c5 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) C58089
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C58089 C58089_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=C58089 /DEF=C.elegans cDNA clone yk311c5 : 3prime end, single read. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Sequence
Target Sequence 
>C. ELEGANS:172954_AT
gcagagtagatggagtgccacgtggtngggagagtgagcagaatcgggttattngtgnag
aanactttccccaagttgcccacggacattgagatggaagattcggcccattattgcggt
agcccacggtaattgggatcganactccagccacaattattgtccgatgatgttgcattg
gtttcgagat

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAGAGTAGATGGAGTGCCACGTGG 454 311 51 Antisense
GGGAGAGTGAGCAGAATCGGGTTAT 247 495 78 Antisense
CCAAGTTGCCCACGGACATTGAGAT 415 277 121 Antisense
GACATTGAGATGGAAGATTCGGCCC 177 371 135 Antisense
GGAAGATTCGGCCCATTATTGCGGT 497 531 146 Antisense
TTCGGCCCATTATTGCGGTAGCCCA 254 683 152 Antisense
ATTATTGCGGTAGCCCACGGTAATT 514 11 160 Antisense
GGTAGCCCACGGTAATTGGGATCGA 470 505 168 Antisense
ACTCCAGCCACAATTATTGTCCGAT 473 99 194 Antisense
ATTGTCCGATGATGTTGCATTGGTT 192 5 209 Antisense
GATGATGTTGCATTGGTTTCGAGAT 516 409 216 Antisense
Sequence Source Affymetrix Proprietary Database