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[172953_s_at]

Description C59521_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=C59521 /DEF=C.elegans cDNA clone yk437e2 : 3prime end, single read.
Cluster 4grp_high_8_8 > 40      6grp_total > 46      4grp_total > 54      6grp_cgc > 35      6grp_cgc_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 99
1 2 3 4 range
A 152
(3)
P 		70
(-2.8)
P 		99.1
(-0.7)
P 		67.1
(-3)
P 		85
B 155.9
(3)
P 		97.2
(-2.9)
P 		96.4
(-3)
P 		107.7
(-1.9)
P 		60
C 136.5
(3)
P 		125.8
(2.2)
P 		121.4
(1.9)
P 		56.7
(-3)
A 		80
avr 148.1
(3) 		97.7
(-1.3) 		105.6
(-0.6) 		77.2
(-3) 		71

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 87
1 2 3 4 5 6 range
A 64.4
(0.7)
A 		93.7
(2.9)
P 		62.6
(0.5)
P 		95.2
(3)
P 		76.1
(1.6)
A 		16
(-3)
A 		79
B 56.9
(-1)
P 		58.1
(-0.9)
P 		68.1
(0.1)
A 		40.5
(-2.6)
P 		36.7
(-3)
A 		97.8
(3)
P 		61
C 90.1
(2)
P 		99.3
(2.7)
P 		73.8
(0.7)
P 		28.4
(-3)
A 		34.1
(-2.5)
A 		103
(3)
P 		75
avr 70.5
(0.7) 		83.7
(3) 		68.2
(0.3) 		54.7
(-2) 		49
(-3) 		72.3
(1) 		35
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 46
1 2 3 4 range
A 55.3
(3)
P 		15.2
(-2.3)
P 		25.9
(-0.9)
P 		9.8
(-3)
P 		46
B 49.7
(3)
P 		24
(-2.6)
P 		22.3
(-3)
P 		22.9
(-2.9)
P 		27
C 45.2
(3)
P 		36.2
(1.5)
P 		42.3
(2.5)
P 		9.6
(-3)
A 		36
avr 50.1
(3) 		25.1
(-1.2) 		30.2
(-0.3) 		14.1
(-3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 11.9
(-1.4)
A 		33.3
(3)
P 		13.6
(-1)
P 		24.2
(1.1)
P 		23
(0.9)
A 		3.9
(-3)
A 		29
B 19.8
(-0.9)
P 		19.3
(-1)
P 		16.5
(-1.7)
A 		10.7
(-3)
P 		14.9
(-2)
A 		36.5
(3)
P 		26
C 33.4
(2.8)
P 		30.3
(2.1)
P 		18.8
(-0.3)
P 		5.7
(-3)
A 		11
(-1.9)
A 		34.5
(3)
P 		29
avr 21.7
(0.5) 		27.6
(3) 		16.3
(-1.8) 		13.5
(-3) 		16.3
(-1.8) 		25
(1.9) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172953_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26635
Sequence Type Exemplar sequence
Representative Public ID C59521 NCBI
Target Description C59521_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=C59521 /DEF=C.elegans cDNA clone yk437e2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027999(11), NM_001028000(11), NM_001028002(11), NM_001028001(11), NM_001028003(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027999 NCBI Caenorhabditis elegans Inositol Triphosphate Receptor family member (itr-1) (itr-1) mRNA, complete cds. 11/11 None
NM_001028000 NCBI Caenorhabditis elegans Inositol Triphosphate Receptor family member (itr-1) (itr-1) mRNA, complete cds. 11/11 None
NM_001028002 NCBI Caenorhabditis elegans Inositol Triphosphate Receptor family member (itr-1) (itr-1) mRNA, complete cds. 11/11 None
NM_001028001 NCBI Caenorhabditis elegans Inositol Triphosphate Receptor family member (itr-1) (itr-1) mRNA, complete cds. 11/11 None
NM_001028003 NCBI Caenorhabditis elegans Inositol Triphosphate Receptor family member (itr-1) (itr-1) mRNA, complete cds. 10/11 None
SNAP00000032720 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7685641:7696687:1 11/11 None
GENEFINDER00000032732 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7681694:7692973:1 11/11 None
F33D4.2a ENSEMBL cdna:known chromosome:CEL140:IV:7675157:7696907:1 gene:F33D4.2 11/11 A 
F33D4.2d ENSEMBL cdna:known chromosome:CEL140:IV:7677552:7696687:1 gene:F33D4.2 11/11 A 
F33D4.2f ENSEMBL cdna:known chromosome:CEL140:IV:7681343:7696907:1 gene:F33D4.2 11/11 A 
F33D4.2e ENSEMBL cdna:known chromosome:CEL140:IV:7681343:7696907:1 gene:F33D4.2 11/11 A 
F33D4.2g ENSEMBL cdna:known chromosome:CEL140:IV:7681409:7691799:1 gene:F33D4.2 10/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7691541-7692155(+) 99.33 99.33
Public Domain and Genome References
Ensembl F33D4.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAW30668 Inositol triphosphate receptor protein 1, isoform a [Caenorhabditis elegans] emb|CAB45861.1| inositol 1,4,5-trisphosphate receptor [Caenorhabditis elegans] ref|NP_001023170.1| Inositol Triphosphate Receptor family member (itr-1) [Caenorhabditis elegans] 0.0
blast AAW30669 Inositol triphosphate receptor protein 1, isoform d [Caenorhabditis elegans] emb|CAB45862.1| inositol 1,4,5-trisphosphate receptor [Caenorhabditis elegans] ref|NP_001023171.1| Inositol Triphosphate Receptor family member (itr-1) [Caenorhabditis elegans] 0.0
blast AAK68366 Inositol triphosphate receptor protein 1, isoform f [Caenorhabditis elegans] emb|CAB45860.1| inositol 1,4,5-trisphosphate receptor [Caenorhabditis elegans] ref|NP_001023173.1| Inositol Triphosphate Receptor family member (itr-1) [Caenorhabditis elegans] gb|AAF05302.1| inositol 1,4,5-trisphosphate receptor [Caenorhabditis elegans] 0.0
blast AAK68365 Inositol triphosphate receptor protein 1, isoform e [Caenorhabditis elegans] emb|CAB45863.1| inositol 1,4,5-trisphosphate receptor [Caenorhabditis elegans] ref|NP_001023172.1| Inositol Triphosphate Receptor family member (itr-1) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR005821 EMBL-EBI Ion transport protein 2.6E-12
Pfam IPR003608 EMBL-EBI MIR domain 6.7E-6
Pfam IPR003608 EMBL-EBI MIR domain 5.4E-15
Pfam IPR000699 EMBL-EBI Intracellular calcium-release channel 9.5E-53
Pfam IPR000699 EMBL-EBI Intracellular calcium-release channel 3.0E-22
Pfam IPR005821 EMBL-EBI Ion transport protein 2.6E-12
Pfam IPR003608 EMBL-EBI MIR domain 6.7E-6
Pfam IPR003608 EMBL-EBI MIR domain 5.4E-15
Pfam IPR000699 EMBL-EBI Intracellular calcium-release channel 9.5E-53
Pfam IPR000699 EMBL-EBI Intracellular calcium-release channel 3.0E-22
Pfam IPR005821 EMBL-EBI Ion transport protein 2.6E-12
Pfam IPR003608 EMBL-EBI MIR domain 6.7E-6
Pfam IPR003608 EMBL-EBI MIR domain 5.4E-15
Pfam IPR000699 EMBL-EBI Intracellular calcium-release channel 9.5E-53
Pfam IPR000699 EMBL-EBI Intracellular calcium-release channel 3.0E-22
Pfam IPR005821 EMBL-EBI Ion transport protein 2.6E-12
Pfam IPR003608 EMBL-EBI MIR domain 3.5E-12
Pfam IPR000699 EMBL-EBI Intracellular calcium-release channel 9.5E-53
Pfam IPR000699 EMBL-EBI Intracellular calcium-release channel 3.0E-22
Pfam IPR005821 EMBL-EBI Ion transport protein 2.6E-12
Pfam IPR003608 EMBL-EBI MIR domain 5.4E-15
Pfam IPR000699 EMBL-EBI Intracellular calcium-release channel 9.5E-53
Pfam IPR000699 EMBL-EBI Intracellular calcium-release channel 3.0E-22
Pfam IPR003608 EMBL-EBI MIR domain 7.6E-12
Pfam IPR000699 EMBL-EBI Intracellular calcium-release channel 9.5E-53
Pfam IPR000699 EMBL-EBI Intracellular calcium-release channel 3.0E-22
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001023170.1 5 2475-2497,2510-2532,2571-2593,2616-2638,2731-2753
NP_001023171.1 5 2419-2441,2454-2476,2515-2537,2560-2582,2675-2697
NP_001023173.1 5 2429-2451,2464-2486,2525-2547,2570-2592,2685-2707
NP_001023172.1 5 2440-2462,2475-2497,2536-2558,2581-2603,2696-2718
F33D4.2a 5 2475-2497,2510-2532,2571-2593,2616-2638,2731-2753
F33D4.2d 5 2419-2441,2454-2476,2515-2537,2560-2582,2675-2697
F33D4.2f 5 2429-2451,2464-2486,2525-2547,2570-2592,2685-2707
F33D4.2e 5 2440-2462,2475-2497,2536-2558,2581-2603,2696-2718
SNAP00000032720 5 2143-2165,2178-2200,2239-2261,2284-2306,2399-2421
Sequence
Target Sequence 
>C. ELEGANS:172953_S_AT
gtttaaattctatcttcatccacttcatgctgccgaaggaagtgttcttgttgaagttat
acatacacctgaantactcttcccagaaggatcagcacttcgtgatcaatgtgctcgtgg
aggtgttgttgcaaaactcattcaacattgtaaaaccctgatgcaaaacaaacaagataa
tctctgtgctcgtgtgcttcagacgttgtgcaaaatgtgcgattgcacaaaacagcagct
tactcatcaggg

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTTAAATTCTATCTTCATCCACTT 401 449 28 Antisense
TCATCCACTTCATGCTGCCGAAGGA 24 623 43 Antisense
CGAAGGAAGTGTTCTTGTTGAAGTT 261 239 61 Antisense
TACTCTTCCCAGAAGGATCAGCACT 681 645 102 Antisense
GATCAGCACTTCGTGATCAATGTGC 512 421 117 Antisense
ATGTGCTCGTGGAGGTGTTGTTGCA 553 49 136 Antisense
CTCATTCAACATTGTAAAACCCTGA 277 229 164 Antisense
AAAACCCTGATGCAAAACAAACAAG 519 129 179 Antisense
AGATAATCTCTGTGCTCGTGTGCTT 601 65 202 Antisense
GCTTCAGACGTTGTGCAAAATGTGC 210 305 223 Antisense
CAAAACAGCAGCTTACTCATCAGGG 260 191 255 Antisense
Sequence Source Affymetrix Proprietary Database